Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq621 149 5e-30 seq569 102 6e-16 >seq621 Length=54019043 Score = 149 bits (164), Expect = 5e-30 Identities = 907/1439 (63%), Gaps = 26/1439 (2%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | || || || |||||||| ||||| | ||| || ||||| || || ||||||| Sbjct 48089697 CGGCACTGACGTTCAGGATACCATTAGCATCTATATCGAAAGTGACCTCGATCTGAGGGA 48089756 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| || | | ||| | ||||| || || || | Sbjct 48089757 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 48089816 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTAACTACAGTT-TGATTATCTGA 281601 | || | | ||||| || | | |||| ||| | | ||| || || ||||| Sbjct 48089817 TTGTCATAGCCCTCTCACCTTCATACACCTGGACTAGGACG--CTGTTCTGGTTGTCTGA 48089874 Query 281602 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 48089875 GTAGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAG 48089933 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 |||||| | ||||||||||| || | || || || || || |||||||| | |||| Sbjct 48089934 CGGTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGA 48089993 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || ||| | |||||| | | || | || ||||||||||| | |||||||| Sbjct 48089994 GCAGATCTTGCACGTTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCAC 48090053 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 |||| ||||| |||||||| ||||| | | | || || | ||| |||||||| || | Sbjct 48090054 CATAAGCAACTGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGT 48090113 Query 281841 -TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 || | || || | | |||||||||||||| || || || || | ||||| || Sbjct 48090114 CCTGCAGCAACTT-TTGGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCC 48090172 Query 281900 TGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCA 281959 || | ||| ||||| || || | ||| | | || || || || || || | Sbjct 48090173 TGGATCTGGCCCTTATCGAGCTTGGCATCTCGCAGCGCCTTCTCCACTGGCTCCAGGGTA 48090232 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 | | || | || | | || || || || || | ||| | | | | || Sbjct 48090233 CCACGGAAAAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTGATGGAGGTGTAGAAA 48090292 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || || || | || |||| ||||| | | ||| || ||||| || | | Sbjct 48090293 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 48090352 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || || | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 48090353 CGCTTCGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCAA 48090410 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 282195 || || | || | |||||| ||||| |||| ||| | || | ||| || || Sbjct 48090411 TGTCACGCTTGTGCTTACGCTTGAACTCTTC--CACAAAATGGTTCACCATACGGTTGTC 48090468 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 48090469 AAAGTCCTCCCCACCCAGGTGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCATC 48090528 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | | | || | |||||| || || || |||| ||||| || || ||||| Sbjct 48090529 CTCGATGGTAAGAATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 48090588 Query 282316 CATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | ||| | || || || || | ||||| |||| ||||||||| || || Sbjct 48090589 CTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCAATAGCAGCAGCCGTGGG 48090648 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 || || ||||| | || || ||||| |||| || | || |||||||| ||||| || Sbjct 48090649 CTCGTTGATAATACGCATCACGTTAAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 48090708 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTC 282488 | || || || || || || ||||| || || ||||| ||| |||| ||| | ||| | Sbjct 48090709 GCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATAACAGCATTCTG-TACCTTTTTCC 48090767 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | || || || | | ||||| || | | | ||| || || | || | Sbjct 48090768 CCAGGTAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCCG 48090827 Query 282549 GAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 | ||| | | ||| || || || |||| | | || || ||| || Sbjct 48090828 G-GAAGAAGGTCTTCATCTCTCCTTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCA 48090886 Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667 || | || || ||||| | ||||| || || || || | |||| | | | | Sbjct 48090887 TTCACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACCGTGGGGTCGTCATACTTG 48090946 Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATAT 282727 | || || | || || |||||||| || || ||||| || || | || |||| | Sbjct 48090947 CGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATGGCCACTTGGTTC 48091006 Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 ||||| ||||| || || ||| | || || || ||||| | ||||| || || ||| Sbjct 48091007 TTGGCAGCATCCCCGATGAGACGCTCCGTATCGGTAAAGGCCACATAGCTGGGCGTGGTG 48091066 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || || || || || || || || || ||||| |||| || | ||||| ||||| Sbjct 48091067 CGGTTTCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACACA 48091125 >seq569 Length=82189922 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 30619448 TGTTGTGGCTACGGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 30619507 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 30619508 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 30619567 Query 131296 TGATGG 131301 |||||| Sbjct 30619568 TGATGG 30619573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740531619302712