Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq450 129 1e-24 >seq450 Length=100941466 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | || ||||| || |||||| ||||||||||||| ||||| Sbjct 72317928 GCTTTATGGTGGTATTATGTCTCCAAAGGAATCGAATACCTAGATACAGTGTTCTTCATC 72317987 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || || || || | || ||||| || || ||||| ||||| || ||||| Sbjct 72317988 CTGAGGAAGAAATTCAACCAAATCAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 72318047 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||| | ||| | ||||| || ||| ||||||| || || Sbjct 72318048 ACTTTGTGGTGGATTGGTATCAAGTGGGTTGCAGGTGGACA 72318088 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 72320647 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 72320706 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| |||| || || || || |||||||| Sbjct 72320707 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 72320766 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||||| | | ||||| ||| Sbjct 72320767 TAACTTCTATTATCGGACATATAAG 72320791 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| |||| | ||||| |||||||||||||| | |||||||| Sbjct 72319815 GCTTTTTTTGGAGCTCAGATGAACGCATTTATTCATGTTATTATGTACATGTATTATGGA 72319874 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || || | || ||| | |||||||| || ||| | |||||| Sbjct 72319875 CTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGATACTTGACTATA 72319934 Query 58661 ATGCAATTGGTA 58672 ||||||||||| Sbjct 72319935 CTGCAATTGGTA 72319946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903388479208320