Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq769 136 4e-27 seq1 104 2e-17 >seq769 Length=8760791 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 5350530 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 5350471 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| |||||||| |||||||||||||| |||||| ||| Sbjct 5350470 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTC 5350411 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 5350410 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 5350351 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 5350350 TTCACAAAGATCTGCATG 5350333 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||||||||| || ||||| || || ||| | || || ||||| Sbjct 5350993 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 5350934 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| |||||||| ||||| || ||||| |||||| Sbjct 5350933 CTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGGATCTT 5350874 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| |||| || || || | ||||| ||| ||||| || Sbjct 5350873 GGCCTTCACGTTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGT 5350814 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| |||||||| Sbjct 5350813 CAGGGTTTTCACGAAGATCTGCAT 5350790 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || || || | | | || ||||||||||||| Sbjct 5351443 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCGAGCTGCTTGC 5351385 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||| |||||||| ||||||||||| || |||||| || Sbjct 5351384 CAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGGATCTTAGCCT 5351325 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || ||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 5351324 TCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 5351265 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 5351264 TCTTCACAAAGATCTGCAT 5351246 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | ||| |||||||| Sbjct 5350765 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCGAGCTG 5350706 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || | || |||||| |||||||| |||||||| || || |||||| Sbjct 5350705 CTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCCTGGATCTT 5350646 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| || ||| ||||||| || || | ||||| ||| ||||| || Sbjct 5350645 GGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5350586 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 5350585 CAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | ||| || ||||| Sbjct 5351221 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 5351162 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || ||||| |||||||| ||||| |||||| Sbjct 5351161 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTT 5351102 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 5351101 GGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5351042 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 5351041 CAGGGTCTTCACAAAGATCTGCAT 5351018 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 5351671 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 5351612 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| |||||||| |||||||| ||||| |||||| ||| Sbjct 5351611 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 5351552 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| ||||||| || || | ||||| ||| || || || || || Sbjct 5351551 CACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGT 5351492 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 5351491 CTTCACAAAGATCTGCAT 5351474 >seq1 Length=175656249 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | ||| || |||||||||||||| |||| ||||| |||||| Sbjct 174294498 TACTCCACTATTTCTGTGCAGAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 174294557 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTT 148985 ||||| |||||||| | ||| |||||||||||||| ||| |||||| || ||||| | Sbjct 174294558 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTGCGAT 174294617 Query 148986 TC 148987 || Sbjct 174294618 TC 174294619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408641966880