Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq450 145 9e-30 seq808 141 1e-28 seq725 127 2e-24 >seq450 Length=100941466 Score = 145 bits (160), Expect = 9e-30 Identities = 456/695 (66%), Gaps = 15/695 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || || || | |||| | || | |||| Sbjct 66388283 GCCAGCTCTCTTGGGGATAGAAAATCTTCCACATGGATAAAGGAGTCTGCTGGAATGTAA 66388342 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 66388343 TTCTCGTAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 66388402 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | ||||| ||||| | || |||||| Sbjct 66388403 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAGTTTTCAAATGAAAGGTAGAAT 66388462 Query 177126 TTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | | || |||| | ||| | || ||||| | | | Sbjct 66388463 TTGCAACTGGAGATAGTTG--GAATTAAGTTTTTATCATTGACGTAGTCTCCAAAGGCTT 66388520 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 |||||| ||| || || |||| ||| || ||||| ||| || || || || || Sbjct 66388521 GCCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCG 66388579 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || || |||||| || || || ||||| ||||| || || ||||| | || || Sbjct 66388580 TGCTCAGGGTTCCAGTTACTTACAACCCAACAAACCAAGTTT-TCTTTACTTGGCAC--- 66388635 Query 177302 ATTCGATAC-TAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359 ||| |||| ||| | || | | | || | | | || ||||| ||||| |||||||| Sbjct 66388636 -TTC-ATACGTAAAGGAGCTTGTACCGACCATCATGGAGCCATAAGGCACCTGAATATCT 66388693 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGG 177419 || || |||| ||| || | || || || || |||| ||| || || || || Sbjct 66388694 GAATCACGTCGGTAAGTCAGGGTTAGGTTAAAGAGGTGTTCAATGCCACTCTTCTGTGGT 66388753 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | | || ||||| ||||||||||| ||||| || || || | ||| |||| || | Sbjct 66388754 GTATGAGTTGGAGATTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTGC 66388813 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| | || || ||||| |||| | || || | || Sbjct 66388814 TGAGGTAAATTAGTCAGATCCCAGTTAATGTCCCTGTGATGAATAAGAACTGCGTGGGAC 66388873 Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599 |||| ||| | || | ||| | || | || ||| | | ||||| || | | Sbjct 66388874 TTGTTATATAGTGAGCGGTCAATAGTCAGATGGCACCCGTGGATGTTGAACATTGTTTGG 66388933 Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCA 177634 || | |||||||||||| ||||| | ||||| Sbjct 66388934 CAGGATGTTAGATCAAATGTCTGGCCAAATGGCCA 66388968 >seq808 Length=67000979 Score = 141 bits (156), Expect = 1e-28 Identities = 239/343 (70%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | |||||||| |||| ||||| || || | ||||||||| || || Sbjct 33629835 TTGGTCTTGATAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTT 33629776 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 || || ||||| | | ||||| | ||| ||||| || | ||||| || || ||| Sbjct 33629775 CTTCTATAGAGATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCATGAAGCATAC 33629716 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||| ||| ||| | |||||||| || ||||| ||||||||||| || Sbjct 33629715 ACAACACTCTCTAACTGGCTGGATATGAAGACATTATCAAAACAGGAAACTATCCCTTTC 33629656 Query 162835 ACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || | | || | || | || || | ||| || || || || | |||||| | |||| Sbjct 33629655 ACAG-CTGTAAAAAAAGATTCTGG--AGATTTTCTGTCAACATGGATGCAGTAAAAATTC 33629599 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || ||||| | ||||| | ||| || | |||||| || || || | ||||| Sbjct 33629598 TGAGGAGCATAGATTGATCTCAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACT 33629539 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || | ||||||| Sbjct 33629538 ATTGAGTAAGCAATCGGAAATTCTGCTTCTTCACTGCTGAGAG 33629496 >seq725 Length=18483700 Score = 127 bits (140), Expect = 2e-24 Identities = 231/332 (70%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| ||||||||||||||| || | || || ||| ||| | Sbjct 4488168 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAGCGCCAGGGCACGGGG 4488227 Query 162715 AGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 || | | ||| ||| | | ||||| || |||||||| | || |||||| ||||| Sbjct 4488228 C-TCTGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCACGAGGCGTA 4488286 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| |||||||||| | |||| || ||||| ||| ||| || | | || || Sbjct 4488287 CACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCG 4488346 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 |||||| | ||| | |||| | ||| || || ||||| |||||||| | ||| Sbjct 4488347 CACGGCTCGCTGGAAGGCGGCGGGAGC-CTTGCCG-TCCACGTGGACGCAGTAGACGTTC 4488404 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || |||||||||| | | ||| | | |||||||||||| ||||| ||||| | || Sbjct 4488405 TGCGGGGCGTAGAGAGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACC 4488464 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || || || || |||||||| || |||||||| Sbjct 4488465 ATGGAGTAAGCGATGGGGAAGTCGGCCTCCTC 4488496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578417452435200