Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq769 98.7 7e-16 seq756 98.7 7e-16 >seq769 Length=8760791 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| |||||| || |||||||| || || || ||||| |||| || Sbjct 5350543 CACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCTTC 5350484 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||| | ||||||||| | || | ||||| ||||| Sbjct 5350483 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTG 5350424 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| || | |||||| || | || || |||| ||||| || | Sbjct 5350423 GATCTTGGCCTTCA-CATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCT 5350365 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 5350364 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5350334 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 5350788 CCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5350729 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || || ||||| | ||||||||| | || Sbjct 5350728 AGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5350669 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||||| || || || |||| ||| ||| ||| ||||| | || || Sbjct 5350668 ATGCCTTCTTTATCCTGGATCTTGGCCTTCA-CATTCTCAATGGTATCGCTGGGCTCAAC 5350610 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || |||||||||||||| Sbjct 5350609 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||||| || || ||| ||| || || |||||||| || || Sbjct 5351700 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5351641 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 5351640 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5351581 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| |||| || | |||||| || | || || Sbjct 5351580 ATGCCTTCTTTGTCTTGGATCTTGGCCTTC-ACATTTTCAATGGTGTCACTGGGCTCAAC 5351522 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | || || |||||||||||||| Sbjct 5351521 CTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 5351244 CCACCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5351185 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 5351184 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 5351125 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| || | || | |||||| || | || || Sbjct 5351124 ATGCCTTCTTTGTCTTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCAAC 5351066 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 5351065 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| || ||| |||||| || |||||||| || || || ||||| | || || Sbjct 5350999 CACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 5350940 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || || |||| | ||||||||| | || | || |||||||| Sbjct 5350939 CAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTG 5350880 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | || | |||||| || | ||| || |||| ||||| || | Sbjct 5350879 GATCTTGGCCTTCA-CGTTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCT 5350821 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || ||||||||||| Sbjct 5350820 TGCCAGTCAGGGTTTTCACGAAGATCTGCAT 5350790 >seq756 Length=11697260 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| || ||| ||| || || ||||| || ||||| |||||||| | || || Sbjct 3815408 CACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCATCTTC 3815349 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || |||||| || || || |||| | ||| || || | || | || || ||||| Sbjct 3815348 CAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTG 3815289 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | ||| ||||||||| | ||| || || | ||||| |||| Sbjct 3815288 GATCTTGGCCTTCA-CGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATGGTTT 3815230 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||| || || || |||||||||||||| Sbjct 3815229 TACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||| || || | || | ||| | ||| || ||| ||| || || |||||||| || Sbjct 3815657 GTTACCGCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 3815598 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||| |||||||| | || |||| || || || ||||| ||||| | ||| || || | Sbjct 3815597 GGACAGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGG 3815538 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 || | || || ||||| || || |||| | | ||| |||||| || | || Sbjct 3815537 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCACTGGGTT 3815479 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| ||||| || || | || || || ||||||||||| Sbjct 3815478 CAACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695939767040