Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-40 seq253 91.5 2e-12 seq450 89.7 7e-12 >seq1 Length=175656249 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| ||| ||||| Sbjct 43873067 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 43873014 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| | || ||||||| |||||| ||| Sbjct 43873013 GGCATCATGAACTCCTTTGTCAACGACATCTTTGAGCGCATCGCGGGTGAGGCCTCGCGC 43872954 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 43872953 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACAGCCGTGCGC 43872894 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 43872893 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCGGTCTCGGAGGGCACCA 43872845 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 43760272 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 43760219 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 43760218 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 43760159 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 43760158 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 43760099 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 43760098 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTCTCGGAGGGCACCA 43760050 Score = 179 bits (198), Expect = 5e-39 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || |||| ||||| Sbjct 43777748 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCCAAGGCCATG 43777801 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 43777802 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 43777861 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 43777862 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 43777921 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 43777922 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTCTCGGAGGGCACCA 43777970 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 43792124 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 43792177 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 43792178 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 43792237 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 43792238 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 43792297 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 43792298 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTCTCGGAGGGCACCA 43792346 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 43835753 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 43835700 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 43835699 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 43835640 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 43835639 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 43835580 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 43835579 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTCTCGGAGGGCACCA 43835531 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || || ||||| Sbjct 43785961 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCTAAAGCCATG 43785908 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 43785907 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 43785848 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 43785847 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 43785788 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 43785787 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTCTCGGAGGGCACCA 43785739 Score = 132 bits (146), Expect = 7e-25 Identities = 172/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| || ||| |||||||| || ||| Sbjct 14229771 TCTACAAGGTGCTAAAGCAGGTCCACCCCGACAC---TGGCATCTCCTCCAA--AG-CCA 14229718 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGGT 725030 || ||||||||||| |||||||| ||||| | || || | |||| | |||| Sbjct 14229717 TGGGCATCATGAACTCATTTGTCAATGACATCTTTGAGCGGCT-GGCAGTGGAGGCATCG 14229659 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||||| || | |||| | | | ||| ||| || | ||| | ||||| |||||| Sbjct 14229658 CGCCTGGTGCAGTACAACCACCACTCCACCATCACCAGCAGAGAGGTGCAGACAGCCGTG 14229599 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||||||||||||||||| Sbjct 14229598 CGCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 14229547 Score = 91.5 bits (100), Expect = 2e-12 Identities = 182/253 (72%), Gaps = 30/253 (12%) Strand=Plus/Minus Query 724914 TACAA--GGTGCTCAAGCAGG-TGCA--CCCCCGAACCGTTGGGCCATCCTCCAACAA-- 724966 ||||| |||||| ||||||| |||| | ||||| || ||| ||| ||| | | Sbjct 43855002 TACAAAGGGTGCTGAAGCAGGCTGCAGTCGCCCGACACGGTGG--CATTCTCGTCCCAAG 43854945 Query 724967 GTCCATGTCGATCATGAAC-TCGTTTGTCAACGACATGATCG-ACCGCATCGGCAC---- 725020 | ||||| ||||||||| ||||| ||||||||||| ||| | ||| || |||| Sbjct 43854944 GCCCATGGGCATCATGAACATCGTTCGTCAACGACATCTTCGCAGCGC-TC-GCACGGGG 43854887 Query 725021 CGAGGC---CGGTCGCCTGGCGCGC----TCCAACAAGCGCAACACG---ATCGGCACGC 725070 |||||| | | ||||| | |||| | |||||||| | | || ||| ||| Sbjct 43854886 CGAGGCGTTCCG-CGCCTTGAGCGCAACTACAAACAAGCG-ACCTCGCCTATCACGTCGC 43854829 Query 725071 GCGAGA-TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 | |||| ||||||| |||||||| ||| | ||| ||| || ||||||| |||||| ||| Sbjct 43854828 GGGAGATTCCAGACGGCCGTGCGGCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTC 43854769 Query 725130 TCCGAGGGCACCA 725142 || |||||||||| Sbjct 43854768 TCGGAGGGCACCA 43854756 >seq253 Length=134823679 Score = 91.5 bits (100), Expect = 2e-12 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 |||||||||||| || | |||| |||||||| | ||||| ||||||||||| Sbjct 150561 GCAGGTGCACCCT-GA--CATTGGAATCTCCTCCAA---GGCCATGAGCATCATGAACTC 150614 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCA-CCGAGGCCGGTCGCCTGGCGCGCTCCA 725046 |||||||| ||||| | || || | |||| ||||| ||||||| || | || Sbjct 150615 ATTTGTCAATGACATCTTTGAGCGGCT-GGCAGTGGAGGCATCGCGCCTGGTGCAGTACA 150673 Query 725047 ACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCG 725106 || | | | ||| ||| || | ||| | ||||| |||||||| || | ||| || Sbjct 150674 ACCACCACTCCACCATCACCAGCAGAGAGGTGCAGACAGCCGTGCGGCTCCTGCTGCCCG 150733 Query 725107 GCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||||||| |||||| || ||||| ||||||| Sbjct 150734 GTGAGCTGGCCAAGCACGCTGTGTCCGAAGGCACCA 150769 >seq450 Length=100941466 Score = 89.7 bits (98), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 || ||||||||||| || ||||| || || ||| | |||||||||| ||||| Sbjct 88060535 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 88060594 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||||||||| ||||| || |||||||| Sbjct 88060595 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 88060647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177617138901944