Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq756 131 2e-25 seq769 125 6e-24 >seq756 Length=11697260 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| ||||| | ||| || ||| | || ||||||||||| || ||||| Sbjct 3815162 CTCCTTCTGGATGTTATAATCAGACAATGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAA 3815103 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || |||||| ||| |||||| ||| | | | Sbjct 3815102 GATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATT 3815043 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| || || || |||| || ||||| Sbjct 3815042 CTCGATGGTGTCACTGGGTTCCACCTCCAATGTGATGGTCTTCCCGGTCAGTGTCTTCAC 3814983 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3814982 GAAGATCTGCAT 3814971 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || ||| | || ||||||||||| || ||||| Sbjct 3815618 CTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAA 3815559 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||| ||||| | ||| | | |||||||||| |||||| ||||| | Sbjct 3815558 GATCAACCTCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 3815499 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||||| ||||| ||||| || |||| || || || Sbjct 3815498 CTCAATGGTGTCACTGGGTTCAACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGAC 3815439 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3815438 GAAGATCTGCAT 3815427 >seq769 Length=8760791 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 5350525 CTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 5350466 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || |||||||| |||||| ||||| | | Sbjct 5350465 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATT 5350406 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 5350405 CTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 5350346 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5350345 AAAGATCTGCAT 5350334 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 5351665 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 5351606 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | | Sbjct 5351605 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATT 5351546 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||| | ||||| || ||||| || | || ||||| Sbjct 5351545 TTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTCAC 5351486 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5351485 AAAGATCTGCAT 5351474 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 5351209 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 5351150 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | Sbjct 5351149 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTT 5351090 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 5351089 CTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 5351030 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5351029 AAAGATCTGCAT 5351018 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 5350981 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 5350922 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||| ||||| |||||| ||||| | Sbjct 5350921 GATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACGTT 5350862 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||| | ||||| || || || |||| |||||||| Sbjct 5350861 CTCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 5350802 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 5350801 GAAGATCTGCAT 5350790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450782262540960