Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq450 138 2e-27 seq253 120 4e-22 seq1 84.2 3e-11 >seq450 Length=100941466 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || |||||||| |||||||||||||||| ||| | || | Sbjct 88063154 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 88063095 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| |||| |||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 88063094 TCAGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 88063035 Query 39759 CAAC 39762 | || Sbjct 88063034 CTAC 88063031 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 88064411 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 88064352 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||| || || || |||||||||||||| ||||| Sbjct 88064351 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 88064317 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| ||||| || || | ||||| |||||||||||||| || ||||| || || Sbjct 88061987 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 88061928 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||| || || || ||||| | |||||| || ||||| || || Sbjct 88061927 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 88061883 >seq253 Length=134823679 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || | ||| ||||| || || | ||| | Sbjct 117709159 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCT 117709100 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || |||||||| || || ||||||||||||||||| ||||| || || | Sbjct 117709099 TCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 117709040 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 117709039 CAACCACTCTCTCACC 117709024 >seq1 Length=175656249 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 || |||| ||| || ||||| ||||| | || || | || || || ||||| || || Sbjct 174302613 CTGAATACTTTCTTAGTTTCTTTGTGCAGGTTGGACACCGCAATCCTCGCTGCCAGGATC 174302672 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||||||||| |||| || || || || ||| | || ||||| | ||||| | Sbjct 174302673 GCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCTGTCTCAGCAGCCAGGGTATCCAGC 174302732 Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 || | ||||| ||||| | || ||||| || || |||||||||| Sbjct 174302733 TCCACGGTTGTGACTCCACTGTACAGCCCCTGGATCACTTTCATGG 174302778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891524243680