Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq253 116 3e-21 seq450 114 1e-20 >seq253 Length=134823679 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||| || | || ||||| || ||| ||||||||||||| Sbjct 92000486 TGATGGCTTTGCCACCTTGCCACGCTCTTTGCCAGTTCTATGTTGTAAATGGTGAACTGT 92000427 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| ||||||| || || || || ||||||||||| || || || || || || | Sbjct 92000426 CTTGCCAACTGTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 92000367 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 92000366 GCTATTCGCTGCTCACATACATGATTGCCCATGTCAC 92000330 >seq450 Length=100941466 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | |||||||||| ||||| ||||| || || |||||||| |||||| Sbjct 88061880 CAGGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 88061939 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 88061940 ATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAAGAT 88061987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446253882060