Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq769 100 2e-16 seq756 91.5 1e-13 >seq769 Length=8760791 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| ||||| |||||||| || | ||||| || Sbjct 5350548 CGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCG 5350489 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| ||||| || || | || || || Sbjct 5350488 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 5350429 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | || | ||||| ||| ||||| || || || || Sbjct 5350428 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5350369 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 5350368 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5350334 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || || || || || |||||||| || | ||||| || Sbjct 5351232 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 5351173 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| ||||| || || | || ||||| Sbjct 5351172 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 5351113 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | | || | ||||| ||| ||||| || || || || Sbjct 5351112 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5351053 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 5351052 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || |||| || | ||| | || || || || || || |||||||| | Sbjct 5350788 CCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5350729 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||||| ||||||||||||| || || ||| | || | | ||| ||||| || || Sbjct 5350728 AGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5350669 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||||| |||| | || | || || ||| ||||| Sbjct 5350668 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACC 5350609 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| |||| || ||||||||||| ||||| Sbjct 5350608 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || || |||||||| || | | || | Sbjct 5351460 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 5351401 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| || || ||| | || | | ||| ||||| || || | || || ||| Sbjct 5351400 TCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTA 5351341 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | | || | || || ||| ||||| || || || || Sbjct 5351340 TCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 5351281 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 5351280 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || || || |||||||| || | ||||| | Sbjct 5351688 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 5351629 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| ||||| || || | || ||||| Sbjct 5351628 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 5351569 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | ||||| ||| ||||| || || || || Sbjct 5351568 TCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5351509 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || ||||||||||| ||||| Sbjct 5351508 GTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 >seq756 Length=11697260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || || || || || || |||||| || ||||| | Sbjct 3815413 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCA 3815354 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || ||||| || ||| | || || | |||||| || || || | ||||| || Sbjct 3815353 TCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTG 3815294 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | | || | ||||| ||| |||||| || | || || Sbjct 3815293 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATG 3815234 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| || ||||||||||| ||||| Sbjct 3815233 GTTTTACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923980077344