Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq769 167 3e-36 seq756 150 2e-31 seq799 89.7 6e-13 seq1 86.0 7e-12 >seq769 Length=8760791 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || |||||||||||| | || Sbjct 5351474 ATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351533 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || || || ||||| || || |||||||| || ||| Sbjct 5351534 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 5351593 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 5351594 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5351653 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || | ||||| Sbjct 5351654 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 5351700 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | | Sbjct 5351246 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 5351305 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || |||||||||| || || || ||||| || |||||||| || ||| Sbjct 5351306 GATACCATTGAGAACGTGAAGGCTAAGATCCAAGATAAGGAAGGCATTCCTCCCGATCAG 5351365 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| ||||| |||| |||||||| | ||||| || Sbjct 5351366 CAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTACAAC 5351425 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || |||| || | ||||| Sbjct 5351426 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 5351472 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || |||||||||||| | | Sbjct 5350562 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 5350621 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||||| || || ||||| || || || |||||||| || ||| Sbjct 5350622 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGATCAG 5350681 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| ||||| || | || ||||| | ||||| || Sbjct 5350682 CAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGACGGGCGCACCCTGTCTGACTACAAC 5350741 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || ||||||| Sbjct 5350742 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCT 5350779 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 5351018 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351077 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || || ||||| || || |||||||| || ||| Sbjct 5351078 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 5351137 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 5351138 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 5351197 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 5351198 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGTGG 5351244 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 5350334 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5350393 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || || |||||||| || |||||||| || ||| Sbjct 5350394 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 5350453 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 5350454 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 5350513 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || || || |||||||| || || || |||| || Sbjct 5350514 ATTCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCT 5350551 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| || || ||||||||||| | || Sbjct 5350790 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 5350849 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || || ||||| ||||| |||||||| || ||| Sbjct 5350850 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCAG 5350909 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 5350910 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5350969 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || ||||| || |||| || Sbjct 5350970 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCT 5351007 >seq756 Length=11697260 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || || | |||||||| | || Sbjct 3815427 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTTGAACCCAGT 3815486 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 3815487 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAA 3815546 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 3815547 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACACTGTCCGACTACAAC 3815606 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || |||| || Sbjct 3815607 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCT 3815644 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || || || || || | |||||||| | | Sbjct 3815199 ATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCTTGGAGGTTGAACCCAGC 3815258 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| || || || ||||| Sbjct 3815259 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAA 3815318 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| || ||||| || |||| || || || | |||||||| Sbjct 3815319 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGATGGGCGCACACTGTCCGACTATAAC 3815378 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || |||| || Sbjct 3815379 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCT 3815416 >seq799 Length=4019625 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 2931159 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 2931100 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || || ||||||||||| || Sbjct 2931099 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGG 2931056 >seq1 Length=175656249 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACTCC 80631 ||||| ||| | |||| ||||| || || | | ||| ||||||||||| || ||| Sbjct 174292355 GGAGAACCCTCATACGTTTCGTAAGGCCCTTGCTCCTTCGCCAGCTCACAGCTCGCTTCC 174292414 Query 80632 ATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGG 80691 | | || | | ||||||| |||||||| || ||||| | |||||| || Sbjct 174292415 AGA---GCACCATAATAAATGGTCTCAAAGATCTGCTGGTTCAGGCGCTGCGCCTCAGGA 174292471 Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751 || || | || | ||||| ||||| | |||||||||||||| || || ||| || Sbjct 174292472 CTTTCAAAGGGGAACCTCATCAGGATGAAGGCATCAGCCAGGCCCTGCACACCAATGCCG 174292531 Query 80752 ATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 || || |||||||| | || || ||||| |||| Sbjct 174292532 ATGGGACGGTGGCGTCTATTGGAGCGCTCTGCCT 174292565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296056693440