Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq725 324 2e-83 >seq725 Length=18483700 Score = 324 bits (358), Expect = 2e-83 Identities = 669/985 (68%), Gaps = 28/985 (3%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667 || ||| ||||||||||| ||||||| |||| | | | || | || ||| | Sbjct 4488571 GAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAAGGAGAGCCGGCGCTACATCGAG 4488512 Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 || |||||| ||| |||| ||| || |||||||| ||||| || || ||||||||| Sbjct 4488511 TTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATCGCTTACTCCATGGTCATCCACCAC 4488452 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 |||||||||||||||||||| |||||| | | ||||||||||||||||| |||||||| Sbjct 4488451 AAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTCTACGCCCCGCAGAACGTCTACTGC 4488392 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||||||| |||| | || || ||| || | ||| |||||||||| Sbjct 4488391 GTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAGCGAGCCGTGCGGGCCATCGCCGCC 4488332 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| ||||| | ||||| ||| ||| | ||||||||||| ||| ||| Sbjct 4488331 TGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCGTGGTCC 4488272 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || ||||||||||||||| ||||||| ||||||| |||||| ||| | Sbjct 4488271 CGGCTGCAGGCCGACCTCAACTGCATGCGGGACCTGCTGCAGAGCCCCGTGCCCTGGCGC 4488212 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| | |||||| ||||| | |||||||| ||||||||||| ||||| || || Sbjct 4488211 TACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCGGAGACGGTCCGC 4488152 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084 |||||| || ||| || ||||| | ||||| ||| | ||||| || Sbjct 4488151 GCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAG---AAGCCCACGGCTTAC 4488095 Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 |||| | | ||| | | | ||||| |||| ||||| | | | ||| Sbjct 4488094 AAGCAGGAGCGCTGGAAGTACCGGCACCGAGTGG--AGCGG----TTCATCTACCGCACG 4488041 Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 | || | | ||| | ||||||||||| | ||||| || |||| | ||| ||| | Sbjct 4488040 GCCACGGAGAAGCCGCCGCCGCCGCTGCGCTCGCCCATGTTCACGGGCAGCGCGTACATC 4487981 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TC 14261 |||| ||| |||| |||||| ||| || ||| || || | ||| | || || Sbjct 4487980 GCGGCCACGCGGGGCTTCGTGCGGCACGTGCT---GGAGGACCCCGAGGCGCAGCGGTTC 4487924 Query 14262 ATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGA 14321 | | ||| | |||||||||||||||||||||||||| ||||||||||| || | | Sbjct 4487923 CTCGAGTGGGCCAAGGACACGTACAGCCCCGACGAGCACGTGTGGGCCACCCTGAACCGC 4487864 Query 14322 ATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGG 14381 | ||| |||||| | | ||| ||| ||||| | ||| || |||||| Sbjct 4487863 GCGCCCGGCGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCACATGTCCGACATGAAC 4487804 Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAG-GGGGATATCAAGAAAGGGGCCCT 14440 || | | | | ||||||||||| ||| ||| || || | | || || | Sbjct 4487803 GCGCTGCCCCGCCTGGTCAAGTGGCAGTAC-CTGAGCGGCGACACGAGCCGCGGAGCGCC 4487745 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCA---CGCCATCTGCATCTTCGGGTCCGGCGA 14497 |||||||| ||| ||| || | |||| || | ||||||||| |||| |||| || Sbjct 4487744 CTACCCGCCCTGCACCGG---CCGCTTCCAGCGCGGCGTCTGCATCTACGGGGCCGGGGA 4487688 Query 14498 CGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGG 14556 |||| |||| || |||| | | || || || ||||||||||||||| ||| || Sbjct 4487687 CGTGGCGTGGATGCTGGAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACTCCGAAGTGG 4487629 Query 14557 ACGAGTTCGCCGTGCGCTGTCTGGA 14581 |||| |||| | | ||||| || Sbjct 4487628 ACGATGCCGCCATCCAGTGTCTCGA 4487604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658722632709120