Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq253 127 2e-24 seq808 91.5 1e-13 >seq253 Length=134823679 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| |||||||| |||||||||||||| || || || || ||||||| ||| Sbjct 92003685 CATGTCTTTGTATTCTGCTCCAAAATGCCTCCACTGAAAACCATAAACTGGTCCCAAGTC 92003744 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||||||| ||| | | || ||||| || |||| || || | || || ||||| | Sbjct 92003745 CCCCTCTTCTCTG-GTGCAAAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCAT 92003803 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || ||||| ||||||||||||||| ||||| || || Sbjct 92003804 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 92003852 >seq808 Length=67000979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| ||| || | |||||| || || Sbjct 57088591 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAAGGGACGATTCTTCTCAGGA 57088532 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 57088531 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 57088484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300436761104