Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq756 131 1e-25 seq769 95.1 8e-15 >seq756 Length=11697260 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| ||| | |||||| ||| |||||| || |||||||| || || Sbjct 3815425 CCTCCCCTGAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 3815366 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| | ||||| |||||||| || || || || | | ||||||||| || || Sbjct 3815365 AGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGG 3815306 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| | || || Sbjct 3815305 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 3815247 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || |||||||| || || || |||||||| ||||||||| Sbjct 3815246 CTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACAAAGATCTGCATG 3815198 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| || || |||| ||| | ||| || ||| |||||| || ||||| || || || Sbjct 3815653 CCGCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3815594 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| | ||||| || || || || ||||| || || | ||||||||| || || Sbjct 3815593 AGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGG 3815534 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | ||| ||||| | || || Sbjct 3815533 ATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAAC 3815475 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| || || | || || || || |||||||| Sbjct 3815474 CTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||| | ||| || ||| |||||| || ||||||||||| || Sbjct 3815198 GCCGCCCCGCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTATAATCAGA 3815139 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| ||| | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 3815138 CAATGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 3815079 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| || |||| || | || || | || ||||| | |||| Sbjct 3815078 GATGCCCTCCTTATCCTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCA 3815020 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | |||| || || || || ||||| | || ||||| || |||||||| ||| Sbjct 3815019 CCTCCAATGTGATGGTCTTCCCGGTCAGTGTCTTCACGAAGATCTGCATCTTG 3814967 >seq769 Length=8760791 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| ||||| || |||||| ||| || |||||||| || || || Sbjct 5350560 CCTCCCCTGAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 5350501 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| || || || || ||||| || | | ||| || || || || Sbjct 5350500 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5350441 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | || ||||| | ||| || Sbjct 5350440 ATGCCTTCCTTGTCTTGGATCTTG-GCCTTCACATTCTCGATGGTGTCACTGGGCTCAAC 5350382 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || || || || || | || |||||||| ||||||||||| Sbjct 5350381 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 5350331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721882436796