Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq253 100 2e-16 seq808 91.5 1e-13 >seq253 Length=134823679 Score = 100 bits (110), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || ||||||| ||| |||||||| ||| | | || Sbjct 92003707 AAATGCCTCCACTGAAAACCATAAACTGGTCCCAAGTCCCCCTCTTCTCTG-GTGCAAAA 92003765 Query 30077 CCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||||| || |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 92003766 CCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTCACACCCTTTGC 92003825 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 92003826 AGAGAGCTCTTTGGCATTTGTAGAACC 92003852 >seq808 Length=67000979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| ||| || | |||||| || || Sbjct 57088591 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAAGGGACGATTCTTCTCAGGA 57088532 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 57088531 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 57088484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153240370632