Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq253 114 1e-20 seq450 111 1e-19 >seq253 Length=134823679 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || ||||||||||| ||||| || || || |||||||||||||| | Sbjct 117709171 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCA 117709112 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||| || || |||||||| || |||||||| |||||||| | Sbjct 117709111 GGCCCCTCTTCTTCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 117709052 Query 4678 CGGCGGCAAACGCTAC 4693 | || || || || || Sbjct 117709051 CTGCAGCGAAGGCAAC 117709036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 4926 CTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 |||||| || | |||||| ||||| || || || ||||||||||| || || | |||||| Sbjct 117706290 CTTTCTCACCAGGTTTTCATTTACAATCCCATCGCTGGCTGCAAAGAAGGCAAGAACATG 117706231 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||| || ||||||| ||| || | || || || |||||||| || | || || | ||| Sbjct 117706230 AGAGATGAAGTACTTTTCATCTGCTTTTAGCTTGTTCCAGTGAGGAAGGTCCTTTGATAA 117706171 Query 5045 ATCAAC 5050 |||||| Sbjct 117706170 ATCAAC 117706165 >seq450 Length=100941466 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || || || |||||||| || | ||| |||||||||||||| || || Sbjct 88063152 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 88063093 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 88063092 AGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 88063033 Query 4692 ACTA 4695 |||| Sbjct 88063032 ACTA 88063029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 88061986 TCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 88061927 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | |||||||| | ||| ||||| Sbjct 88061926 ATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 88061883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039128209996