Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq450 102 1e-16 seq1 84.2 3e-11 >seq450 Length=100941466 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | || |||||||| ||||| || ||||||| || | ||| || Sbjct 88063152 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 88063093 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| || | || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 88063092 AGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGC 88063034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 88064411 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 88064352 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || || ||||| |||||||| ||||| Sbjct 88064351 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 88064317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 88061987 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 88061928 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 ||||| || || || ||||| | ||||||||||| || || ||| Sbjct 88061927 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTCC 88061882 >seq1 Length=175656249 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 174290944 TGGAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 174291003 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || ||||| |||| || |||||||| |||||||||||||| || Sbjct 174291004 TCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGG 174291047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651329079680