Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq450 98.7 1e-15 seq1 87.8 3e-12 >seq450 Length=100941466 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || |||||||| ||||| |||||||||| || | || || Sbjct 88063152 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 88063093 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 88063092 AGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 88063033 Query 46774 AC 46775 || Sbjct 88063032 AC 88063031 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || ||||||||||| || ||||| || ||||| || |||||| Sbjct 88064411 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 88064352 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || || || ||||| |||||||| ||||| Sbjct 88064351 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 88064317 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| ||||| || || | |||||| |||||||||||||| || ||||| || || Sbjct 88061987 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 88061928 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 ||||| || || || ||||| | |||||| || || || || || Sbjct 88061927 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 88061883 >seq1 Length=175656249 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 |||| |||| ||| || ||||| ||||| || || || || || || || || || || | Sbjct 174302611 CGCTGAATACTTTCTTAGTTTCTTTGTGCAGGTTGGACACCGCAATCCTCGCTGCCAGGA 174302670 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||||||||| |||| || || ||| || ||| | || || || | ||||| | Sbjct 174302671 TCGCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCTGTCTCAGCAGCCAGGGTATCCA 174302730 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || ||||| | || ||||| || || |||||||||| Sbjct 174302731 GCTCCACGGTTGTGACTCCACTGTACAGCCCCTGGATCACTTTCATGG 174302778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916469699840