Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq711 147 3e-30 seq761 134 2e-26 >seq711 Length=26894524 Score = 147 bits (162), Expect = 3e-30 Identities = 224/315 (71%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 8959359 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 8959300 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | |||||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 8959299 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGGG 8959240 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || || |||| || ||||| || |||||||| || || | || | || Sbjct 8959239 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCACCAATTTCTACCATTG 8959180 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||||||| || ||||| |||| ||||| ||| Sbjct 8959179 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCGGGATACAGTTCC 8959121 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 8959120 ATAGCATCTATGTCTCCATAAAGTTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 8959061 Query 8587 TTTATTAATAAAAAA 8601 |||||||| || || Sbjct 8959060 ATTATTAATGAATAA 8959046 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || ||||| || || ||||| ||| ||| |||||||| || ||||||| Sbjct 8957342 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 8957283 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || || |||||||| || ||||| || || || |||||||| | || || Sbjct 8957282 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAAGCCTGGG 8957223 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | | | || || || || | ||||| Sbjct 8957222 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGTAGGTGCTCAGGAACATGAGGAGGG 8957163 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || || | || ||||||||||| || | ||||||| Sbjct 8957162 TAGATCATCTCTGCTTGAGTGTCCTTTACAGTTGGTGGATACATTTCTCCATTAATCATC 8957103 Query 9484 TG 9485 || Sbjct 8957102 TG 8957101 >seq761 Length=8971062 Score = 134 bits (148), Expect = 2e-26 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8342 GTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTAC 8401 ||||| ||||||||||| |||| || |||| || ||||| ||||||||||||||| Sbjct 7233326 GTTGCCGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTAC 7233267 Query 8402 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCG 8461 | |||||||||||| |||| | | || || || || || || ||||| || | ||| Sbjct 7233266 TCTGGGGAGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCC 7233207 Query 8462 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8521 | ||||| || || |||||| ||||||| |||| || || | || | ||| | || Sbjct 7233206 ACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAGTCCTGGATAA 7233147 Query 8522 AGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCT 8581 | ||||| ||| |||| ||| || || || || || || || || |||||| ||| Sbjct 7233146 AACTCCAGAGCATCGATGTCCCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCT 7233087 Query 8582 CCTG 8585 |||| Sbjct 7233086 CCTG 7233083 Score = 113 bits (124), Expect = 6e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | |||||| || | |||||||| || ||||||||| ||| ||||| || Sbjct 7231619 CCGATGAGGATGAGCCGTGCTGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGATGCTCC 7231560 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 || ||||| | || || || | |||||| || | ||||||| ||||||||||| | Sbjct 7231559 TGCTTCAGGATGTCACAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATGCAG 7231500 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 ||||| || | ||| || || |||| || || | ||||| || | | || ||| | Sbjct 7231499 AGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCATTGCCAGCTGCTTCTCTTTGGGGATG 7231440 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATA 9464 | || ||||||| |||||||||| | || || |||| || || || || Sbjct 7231439 GCAGGCGGATAGACCATGTGCACCGGCACCTCAGTGACGGACGGTGGGTA 7231390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716858770548480