Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq769 154 4e-32 seq756 141 2e-28 >seq769 Length=8760791 Score = 154 bits (170), Expect = 4e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || |||||||| ||||| ||| | ||| Sbjct 5350793 CAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGTGAC 5350852 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| || |||||||| || || ||||| || ||||| Sbjct 5350853 ACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCAGCAG 5350912 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 5350913 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 5350972 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || ||||| || || ||||||||||| || | ||||| Sbjct 5350973 CAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTCAG 5351010 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 5351021 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 5351078 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| || ||||||||||| || ||||| || |||| Sbjct 5351079 ACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAGC 5351138 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 5351139 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 5351198 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||||||||| || | ||||| Sbjct 5351199 TCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAG 5351238 Score = 122 bits (134), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 5351249 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 5351306 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || ||||| || || || ||||| || ||||| || |||| Sbjct 5351307 ATACCATTGAGAACGTGAAGGCTAAGATCCAAGATAAGGAAGGCATTCCTCCCGATCAGC 5351366 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || |||||||||||||| | || || | || || ||| Sbjct 5351367 AGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTACAACA 5351426 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || ||||| || || || | ||||| Sbjct 5351427 TCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTCAG 5351466 Score = 122 bits (134), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 5351477 CAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 5351534 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || || || ||||| || ||||||||||| || ||||| || |||| Sbjct 5351535 ACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 5351594 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 5351595 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 5351654 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| || || || | ||||| Sbjct 5351655 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAG 5351694 Score = 118 bits (130), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || || || || |||||||| |||| Sbjct 5350326 AGGTAAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGG 5350382 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || ||| ||||||||||||| || || ||||| || ||||| ||||| || Sbjct 5350383 TTGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCAT 5350440 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||| || ||||| | || ||||| || || || ||||| ||||| || | || || Sbjct 5350441 TCCTCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCT 5350500 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || || ||| | || ||||| || || ||||| || || || | ||||| Sbjct 5350501 GTCTGACTACAACATTCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTCAG 5350554 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| ||||| || || ||| Sbjct 5350565 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 5350622 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| || || ||||| ||||| |||||||| || ||||| || |||| Sbjct 5350623 ATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGATCAGC 5350682 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||||||||| || | || || | || || ||| Sbjct 5350683 AGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGACGGGCGCACCCTGTCTGACTACAACA 5350742 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||||||||| Sbjct 5350743 TCCAGAAGGAGTCCACCCTGCATCTTGT 5350770 >seq756 Length=11697260 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| |||||| | ||||| ||| | ||| Sbjct 3815430 CAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTTGAACCCAGTGAC 3815489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 3815490 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAACAG 3815549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || || ||||| |||||||| | || || |||| || ||| || Sbjct 3815550 AGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACACTGTCCGACTACAACATC 3815609 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || || || || ||||||||||| || | ||||| Sbjct 3815610 CAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAG 3815647 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| | ||||||||| | ||| Sbjct 3814974 CAGATCTTCGTGAAGACACTGACCGGGAAGACCATCACATTGGAGGTGGAACCCAGTGAC 3815033 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 3815034 ACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAGCAG 3815093 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || || ||||| |||||||| | || | | ||||||||| || Sbjct 3815094 AGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACATTGTCTGATTATAACATC 3815153 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||||||||| Sbjct 3815154 CAGAAGGAGTCCACCCTGCATCTTGT 3815179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203700169314328