Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1723 109 4e-19 seq2593 93.3 3e-14 >seq1723 Length=1009378 Score = 109 bits (120), Expect = 4e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4301 TGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACC 4360 ||||||| || | |||||||||| |||| ||||| || |||||||||||||| ||||||| Sbjct 127581 TGCTGAGCACTATATTAATTCTGTCTTTCAAAGGACGATTCTTCTCAGGAATGGAGAACC 127640 Query 4361 AAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 | || ||||||||||| |||| | |||||||||| || Sbjct 127641 AGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 127678 >seq2593 Length=513555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| |||||||||||||| || ||||| || ||||| | ||| || | Sbjct 10273 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 10332 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | |||||||| |||||||||| Sbjct 10333 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 10392 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || || |||||| Sbjct 10393 TCTTCACACCCTTTGCAGAGAGTTCTTTG 10421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361185466957430