Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq14920 129 7e-25 seq2927 109 7e-19 >seq14920 Length=2329748 Score = 129 bits (142), Expect = 7e-25 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| ||| || | ||| | | |||||||||||||||||||| | |||||||||||| Sbjct 1853887 GGGCACGCCATCGGGACCAATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 1853828 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| |||||||| | ||| |||| | ||| ||| || Sbjct 1853827 GACGGGGGACCAGATGATGTACTGGGGGTTGGTCATCAGCGAGGAGGGGTCATCGTGTGG 1853768 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || || |||||| || |||| |||||| || || || | ||||||||||| Sbjct 1853767 GAAGGGAAGTGCCTCTTTCAGTAAGGTGAAGAGGGGGTGCGCATTCTTCCCGTTGACCTC 1853708 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| || | | || || |||| | | || ||||||||||| |||| || || Sbjct 1853707 ACACTTCTCAAACATGGTGAAATTTGGCTTGTACCCATTCCCAGGACGAACGTACTCTAG 1853648 Query 83359 GGAAGGCAAGATCTCGGCATT 83379 |||| || |||||| |||| Sbjct 1853647 CGAAGCCAGGATCTCCTCATT 1853627 >seq2927 Length=3770954 Score = 109 bits (120), Expect = 7e-19 Identities = 118/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || |||||||| || ||||| || ||||| ||||||| ||| | || Sbjct 524696 TTACCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 524753 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | |||||||| |||| Sbjct 524754 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGAGACG 524812 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||||||||| | || ||||| || || Sbjct 524813 CCACGTTCTCGATGAGGACCACGCGGCCTCGGAA 524846 Score = 98.7 bits (108), Expect = 1e-15 Identities = 208/301 (69%), Gaps = 12/301 (4%) Strand=Plus/Plus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCT-GGCA-GCGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || | |||| |||| | ||||| | || | || Sbjct 524286 CTGGATGTCGGGCTCCA--GCTGGGCCGTGGGCATGCGGGGACTGTAGCGCCGGAACGGT 524343 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || || | |||||||| ||||||||| |||||||||| | |||| ||| | ||| Sbjct 524344 TCCCCTTCGGGACCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAGCGCCGCACA 524403 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTC-GCTCACGAGCGTGCTCATGTCGTCGCTAGGCGC 83241 || ||||| |||| | || || || | | ||||| |||||| || || Sbjct 524404 GGGCTCCAGGTGATGAAGCGAGGCTCAGCCATCAGGTGTGCT-GCCTCGTCGGCTGGTGC 524462 Query 83242 CGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||||| |||| || ||| ||| ||||| || || | || || || |||| Sbjct 524463 CGGCAGGTGAGCCT-TC--AGGTAGGTGAAGACGGGGTGAGTGTCTGTCCCATTCACCTG 524519 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||||||||| ||||| ||||| ||||| || || || |||| |||||| Sbjct 524520 GCACTTCTGGAAGAGCATGAAGTTGGGCTCAAAGCCCCCTCCGGGCCGCACGTACTTCAG 524579 Query 83359 G 83359 | Sbjct 524580 G 524580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608683183297200