Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq725 127 2e-24 seq1378 116 3e-21 >seq725 Length=5509020 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | |||||||||||| ||||| || ||||| ||||| | Sbjct 5362087 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAA 5362028 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || |||||||| || ||| Sbjct 5362027 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGA 5361968 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| || || | ||| || |||| |||||| | Sbjct 5361967 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACT 5361908 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| || | || || || || || |||||||| Sbjct 5361907 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | |||||||||||| ||||| || ||||| ||||| | Sbjct 5362315 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 5362256 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || ||||| || || ||| Sbjct 5362255 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGA 5362196 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| || || | | | || |||| |||||| | Sbjct 5362195 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAACT 5362136 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || || ||||| || ||||| Sbjct 5362135 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | ||||| | ||||| |||||| ||||| || ||||| ||||| Sbjct 5362547 GTTACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTC 5362488 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||| | | || |||||||| ||||| ||| | || || |||||||| || Sbjct 5362487 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 5362428 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||||||||| || |||||| || || | | | || |||| ||| || Sbjct 5362427 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTC 5362368 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| ||||||||||| || || || || ||||| || ||||| Sbjct 5362367 GACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 >seq1378 Length=1736952 Score = 116 bits (128), Expect = 3e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| | |||||| | |||| |||||||| ||||| Sbjct 707480 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCG 707421 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || || | |||||||||||| |||||| ||| Sbjct 707420 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 707361 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| || | || ||||||||||| || | || Sbjct 707360 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTC 707301 Query 21159 TTGACAAATATTTGCATTTTGA 21180 || ||||| || ||||| |||| Sbjct 707300 TTCACAAAGATCTGCATCTTGA 707279 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| | |||||| | | || |||||||| || || Sbjct 707938 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 707879 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | || |||||||| |||||| ||| Sbjct 707878 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 707819 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||| ||| || | ||| ||||||||||| || | || Sbjct 707818 ACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTC 707759 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 707758 TTCACAAAGATTTGCAT 707742 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| | |||||| | | || |||||||| || || Sbjct 708166 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 708107 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | || |||||||| |||||| ||| Sbjct 708106 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 708047 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||| ||| || | || ||||||||||| || | || Sbjct 708046 ACATTCTCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTC 707987 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 707986 TTCACAAAGATCTGCAT 707970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || || | || ||| | | || |||||||| ||||| Sbjct 707710 GTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCG 707651 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||| ||| | || |||||||| |||||| ||| Sbjct 707650 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 707591 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| || | || || |||||||| || | || Sbjct 707590 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGTCAGGGTC 707531 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 707530 TTCACAAAGATCTGCAT 707514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422182365979880