Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq725 149 6e-31 seq1378 136 4e-27 seq1674 107 2e-18 seq1282 93.3 4e-14 >seq725 Length=5509020 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || |||||| ||| Sbjct 5362317 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTCGAACCCAGT 5362376 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || || ||||| ||| | || ||| Sbjct 5362377 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAG 5362436 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||||| ||||||||| Sbjct 5362437 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 5362496 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 5362497 ATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGG 5362543 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || ||||| ||||| ||||||||| | || || || || Sbjct 5361858 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAAGTTGAGCCC 5361917 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | || || || ||||| ||| | || Sbjct 5361918 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGAT 5361977 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 5361978 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCTGACTAC 5362037 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||||| ||| ||||| |||| || ||| Sbjct 5362038 AACATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 5362088 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || ||| Sbjct 5362089 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 5362148 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || ||||| ||| | || || Sbjct 5362149 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGATCAA 5362208 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||||| ||||||||| Sbjct 5362209 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 5362268 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||||| ||| ||||| |||| || ||| Sbjct 5362269 ATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 5362316 >seq1378 Length=1736952 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 707742 ATGCAAATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAACCCAGT 707801 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| |||||| | |||||| Sbjct 707802 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 707861 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||||||| |||||||||| Sbjct 707862 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 707921 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || || ||||| || | || ||| Sbjct 707922 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 707969 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || ||| ||| Sbjct 707970 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 708029 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| |||||| | |||||| Sbjct 708030 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 708089 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||||||| |||||||||| Sbjct 708090 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 708149 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || || ||||| || | || ||| Sbjct 708150 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 708197 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| |||||||| |||| || || || Sbjct 707281 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCC 707340 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| || ||||| || | || Sbjct 707341 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGA 707399 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||||| |||| ||||||||| ||||| Sbjct 707400 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 707459 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| |||| || || Sbjct 707460 CAACATCCAGAAGGAATCCACCCTCCA 707486 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| |||| || || ||| Sbjct 707514 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTCGAGGTGGAGCCCAGT 707573 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| |||||| | |||||| Sbjct 707574 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 707633 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||| |||||||| || | |||||| | || |||||| Sbjct 707634 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCTTGTCTGATTACAAC 707693 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || || ||||| || | || ||| Sbjct 707694 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 707741 >seq1674 Length=4410459 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||||| || ||||||||||| || || || |||||||| || |||| ||| Sbjct 1958079 GAGCCACTGCTGCGGGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCCAGTACCACGAC 1958020 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| ||||| || || |||||||| || |||||||| | ||||||||| Sbjct 1958019 ATCTGGCAGATGTATAAGAAAGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 1957966 >seq1282 Length=7422214 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| |||||||||||||| || || || ||||||| Sbjct 513616 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGCTCCTTTGCTGCGATATTTT 513675 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 513676 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 513735 Query 117162 ACGAGG 117167 | |||| Sbjct 513736 ATGAGG 513741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515123047216800