Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1378 107 2e-18 >seq1378 Length=1736952 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || |||||||| || || |||||| || || ||||| Sbjct 707487 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 707428 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | ||||||||||||||| ||||| |||||||| || || Sbjct 707427 CTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 707368 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| || ||| ||||||| || | || ||||| || Sbjct 707367 GGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGT 707308 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| |||||||| Sbjct 707307 CAGGGTCTTCACAAAGATCTGCAT 707284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || ||||||||||| || ||||| ||| || ||||| Sbjct 707717 GTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTG 707658 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| | | |||||| || || || || ||||||||||| || || Sbjct 707657 CTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTT 707598 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| || ||| ||||||| || | || ||||| || Sbjct 707597 GGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGT 707538 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || ||||| ||||||||| Sbjct 707537 CAGGGTCTTCACAAAGATCTGCATG 707513 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || |||||||| ||| || |||||| ||| || ||||| Sbjct 708173 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 708114 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | |||||| || || || || ||||||||||| || || Sbjct 708113 CTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTT 708054 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| || || ||||| | || | || ||||| || Sbjct 708053 GGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 707994 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || ||||| ||||||||| Sbjct 707993 CAGGGTCTTCACAAAGATCTGCATG 707969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || |||||||| ||| || |||||| ||| || ||||| Sbjct 707945 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 707886 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | |||||| || || || || ||||||||||| || || Sbjct 707885 CTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTT 707826 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || || ||||| | ||| | || ||||| || Sbjct 707825 GGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTCTTGCCTGT 707766 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || ||||| || |||||| Sbjct 707765 CAGGGTCTTCACAAAGATTTGCATG 707741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433751460491560