Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1137 107 2e-18 seq1378 105 8e-18 seq1028 100 3e-16 seq675 100 3e-16 seq138 100 3e-16 seq725 98.7 1e-15 >seq1137 Length=6643012 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1075244 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 1075303 Query 60123 CTATACTACCGAGGATTGA 60141 |||||||| |||||| ||| Sbjct 1075304 CTATACTAACGAGGAGTGA 1075322 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1072899 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1072958 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1072959 ATACTAACGAGGA 1072971 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| |||||||||| |||||||||| ||||||||||| Sbjct 1077067 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCCTGACAGGCGGGGATACTCACCAC 1077008 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1077007 TATACTAACGAGGA 1076994 >seq1378 Length=1736952 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | ||| || ||| | || || |||||||| || || || Sbjct 707932 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 707873 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | | |||||||||| ||| || || | || Sbjct 707872 ATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 707813 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || | |||||| || | |||||||| ||||| || || ||||| ||| Sbjct 707812 TCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 707753 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 707752 AAGATTTGCAT 707742 >seq1028 Length=2371949 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1416729 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1416670 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1416669 ATACTAACGAGGA 1416657 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1416871 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1416930 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1416931 TACTAACGAGGA 1416942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 465144 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 465085 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 465084 TACTAACGAGGA 465073 >seq675 Length=2232134 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1591193 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1591252 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 1591253 TACTAACGAGGAGTG 1591267 >seq138 Length=13015 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 5045 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4986 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4985 ATACTAACGAGGA 4973 >seq725 Length=5509020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5355692 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5355633 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5355632 TACTAACGAGGA 5355621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571710884540400