Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq722 358 5e-94 seq1708 93.3 3e-14 >seq722 Length=1527175 Score = 358 bits (396), Expect = 5e-94 Identities = 681/998 (68%), Gaps = 6/998 (1%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||||||||| || | ||||| | | ||||||||| ||| |||| | ||||| Sbjct 105177 TACCTCAACATGACGAAGGACTGCGGGAGCTTCAAGGAGACGCGGAGGTTCGTCGAGTTC 105118 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| | || ||| ||| |||||||| |||||||| ||||| |||| | ||| Sbjct 105117 CCGCTGAGCAGGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAG 105058 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || ||||| ||||| |||| || || || || ||| | ||||| || Sbjct 105057 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCGTCTACGCACCGCAAAACGTCTACTGCATC 104998 Query 107808 CACGTGGATGTGAAGTCCCC-AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 ||||| || ||||| || | ||||| || ||||| || ||||| |||| Sbjct 104997 CACGTTGACCGCAAGTCGCCGACCGACTTCCAG-GAGGCCGTGCGAGCCATCGCCGCCTG 104939 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 |||||||||||||||| ||||||| ||| ||| || || ||||| ||||| | Sbjct 104938 CTTCCCCAATGTCTTCGTGGCCAGCCGCCTGGAGAAGGTAGTCTACGCCTCGTGGTCGCG 104879 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 |||| || ||||| ||||||||| | ||| || | ||||| | ||||| ||| || Sbjct 104878 GCTGCAGGCCGACCTCAACTGTATGAAGGACCTGTTGCAGAGTCCTGTGCCGTGGCGCTA 104819 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | || || || || || || || |||||||| |||||||| |||||||| |||| || Sbjct 104818 CCTCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCAAGC 104759 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 ||| ||| || || | || |||||| ||||||| ||| || || | | || | Sbjct 104758 CCTGAAGTTGCTGCACGGGCGGAACAGCCTGGAGTCAGAGAAGCCCTCAGCCTTAAAGCA 104699 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166 || |||||| | |||| ||| ||| | || | | | || || | | || Sbjct 104698 GAAGCGCTGGCACTACCACTACACCGTGGGGAATTCAATCTTCAGGACAGCCACGGTCAA 104639 Query 108167 --GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 || | | ||||| | ||||||||||| || || || || | |||| | Sbjct 104638 ACGGCCGCCACCCCT--CCGGTCCCCCATGTTCACGGGCAACGCGTACATAGTGGTGACG 104581 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284 || ||||| || || || ||||| | |||| | || | | || ||| | Sbjct 104580 CGGGCCTTCGTGCAGCACGTCTTCAAAGACCCCACGGTACAGCAGTTCTTGGAGTGGTCC 104521 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 || |||||||| ||||| ||||| ||| | ||||||||||| | || ||| | || Sbjct 104520 AAGGACACCTACAGCCCTGACGAGCACGTTTGGGCCACCCTCAACCGCATTCCTGGCGTG 104461 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || || | || | ||||||| | | || ||||||| ||| | || | Sbjct 104460 CCAGGTGCCACACCCCAGAATGCCAAGTACGAGCTGTCGGACATGAACGCCCTGGCACGC 104401 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 || ||||||||||||||||| ||||| || ||||| || ||||| || | |||||| Sbjct 104400 CTGGTCAAGTGGCAGTACCAGGAGGGCGACACCAGCAAAGGTGCGCCCTACCCGCCCTGC 104341 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524 | || ||| | | | || ||||||| |||||||| || |||||| | ||||| ||| Sbjct 104340 ACCGGCCGCCACCAGCGCTCCGTCTGCATCTACGGGGCAGGCGACCTGCAATGGATGCTC 104281 Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAG 108584 ||| | || ||| ||||||| |||||||||||||| ||| || ||| | | | ||| Sbjct 104280 CAGCAACACCACTTCTTGGCCAACAAGTTTGACCCCGAGGTAGACGATGTTGCCATCCAG 104221 Query 108585 TGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || | || ||| |||| || |||| |||| ||||||| Sbjct 104220 TGTCTGGAGGAGCACCTGCGCCATATGGCCCTCTATGG 104183 >seq1708 Length=3341979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 195/287 (68%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || | || ||||| || ||||| | Sbjct 3168540 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTATCTGTGGGCAACAATTCAGAGAA 3168481 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | ||||| | ||| || || | ||||| || | || |||||| Sbjct 3168480 -TCCCTGAAGTCCCTGGTGCAGTTTCTTCTAGTGAT---AAGTACGACGTTTCTGACATG 3168425 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || || || | || || Sbjct 3168424 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCTAAAGGTGCA 3168365 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || ||| |||| ||| |||| | || || | |||| ||| ||||| || ||| Sbjct 3168364 CCCTATCCACCATGCAGTGGAGTTCACGTTCGGTCTGTCTGTGTTTTTGGGGCAGGAGAC 3168305 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||| ||||||| || | ||||| || |||| || || |||||||| Sbjct 3168304 CTGAACTGGATGCTACGTAACCACCATTTCTTTGCTAATAAGTTTGA 3168258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348205429226820