Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2593 113 4e-20 >seq2593 Length=513555 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | |||||||||||||| || ||| || |||||||| || || || Sbjct 7064 AGATATTTCTCTGATGGCTTTGCCTCCGTGCCATGCTCTTTGCCAATTCTATGTCCTAAA 7005 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | ||||||||| || ||| | || || | || | ||||||||||| || || ||||| Sbjct 7004 TGGTGAATTGTCTTGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTT 6945 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||||||||| || ||| | ||||| || || ||||| || ||||| |||| Sbjct 6944 CAATATTGCCAGCTATTCACTGCTCACATACATGATAGCCCATGTCACAG 6895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399111364728850