Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1378 122 7e-23 seq725 102 6e-17 >seq1378 Length=1736952 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||||||| ||| ||| | || ||||| || Sbjct 707945 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 707886 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || ||| ||||| || || | |||||||||||| || || Sbjct 707885 CTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTT 707826 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | ||| || |||||||| || Sbjct 707825 GGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTCTTGCCTGT 707766 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||||||||||||||||||| Sbjct 707765 CAGGGTCTTCACAAAGATTTGCATG 707741 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| ||||||||||| ||| ||| |||| ||||| || Sbjct 707487 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 707428 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || ||| || |||||||| | || ||||||||| || || Sbjct 707427 CTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 707368 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||| | || || |||||||| || Sbjct 707367 GGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGT 707308 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||||||||| ||||| ||| Sbjct 707307 CAGGGTCTTCACAAAGATCTGCATCTTG 707280 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||||||| ||| ||| | || ||||| || Sbjct 708173 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 708114 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || ||| ||||| || || | |||||||||||| || || Sbjct 708113 CTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTT 708054 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | || || |||||||| || Sbjct 708053 GGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 707994 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||||||||| |||||| Sbjct 707993 CAGGGTCTTCACAAAGATCTGCATG 707969 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||| || || ||| | || ||||| || Sbjct 707717 GTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTG 707658 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || ||||||| ||| ||||| || || | |||||||||||| || || Sbjct 707657 CTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTT 707598 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||| | || || |||||||| || Sbjct 707597 GGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGT 707538 Query 45313 CAGAGTCTTCACAAAGATTTGCATGT 45338 ||| |||||||||||||| ||||||| Sbjct 707537 CAGGGTCTTCACAAAGATCTGCATGT 707512 >seq725 Length=5509020 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | |||| ||| |||||||| ||||||||||| Sbjct 5362316 GCCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGA 5362257 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || |||| || |||||| ||||| || Sbjct 5362256 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGG 5362197 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| || || |||||| | | | | |||| | ||| || Sbjct 5362196 AATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAAC 5362137 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 5362136 TTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 5362088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| ||||||||||| || ||| | || |||| Sbjct 5362524 CAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCA 5362465 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||| ||| | Sbjct 5362464 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGA 5362405 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | || || |||| ||| || ||||||| Sbjct 5362404 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTCTTGC 5362345 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | |||| |||||||||||||| |||||| Sbjct 5362344 CTGTCAAGGTCTTCACAAAGATCTGCATG 5362316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395003312363530