Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq725 100 2e-16 >seq725 Length=5509020 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| || Sbjct 5362519 TGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 5362460 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | |||||||||||| || | Sbjct 5362459 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTG 5362400 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| ||| ||| ||| | ||||||| | ||||| ||| Sbjct 5362399 GCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTCTTGCCTGTC 5362340 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || ||||| Sbjct 5362339 AAGGTCTTCACAAAGATCTGCAT 5362317 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| || || ||||||||||| | | || | |||||||| || ||||| Sbjct 5362285 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5362226 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| || || |||||||| ||| | |||||||||||| || | ||| Sbjct 5362225 GCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTA 5362166 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| |||||| ||| | ||||||| | ||||| ||||| || Sbjct 5362165 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 5362106 Query 18309 TTTACAAAAATTTGCAT 18325 || ||||| || ||||| Sbjct 5362105 TTCACAAAGATCTGCAT 5362089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| || || ||||||||||| | | || | |||||||| || ||||| Sbjct 5362057 GTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5361998 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| || || || ||||| ||| | |||||||||||| || | |||| Sbjct 5361997 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5361938 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | ||||||| |||||| ||||| ||||||| | ||||| || | || Sbjct 5361937 ACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 5361878 Query 18309 TTTACAAAAATTTGCATTTT 18328 || || || || |||||||| Sbjct 5361877 TTCACGAAGATCTGCATTTT 5361858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379274974802850