Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1674 120 4e-22 seq1282 120 4e-22 seq339 84.2 3e-11 >seq1674 Length=4410459 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | |||||||||||| |||||||| |||||||| || | || | Sbjct 1955020 CCTCATCTCTACTGATGAGTTCGTTAGAAAAGGTGAGTCCAGGCATTAGTCCTCTTTTCT 1955079 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 1955080 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1955139 Query 33724 C 33724 | Sbjct 1955140 C 1955140 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 1953714 GACATTACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 1953773 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 1953774 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1953808 >seq1282 Length=7422214 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 513741 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 513682 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 513681 TCAGCCAAAATATCGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 513622 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | ||||| || Sbjct 513621 CAACCACCCTCTCACC 513606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||| ||| Sbjct 508776 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAGTAT 508717 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | || || ||||| Sbjct 508716 TTTTCATCTGCTTTCAGCTTGTTCCA 508691 >seq339 Length=3172223 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| | | |||| | ||||| || || | |||||||| || ||| ||| Sbjct 2347265 TTTCTATGATGTGTCTGTCGTCTTGCAAGCCTTTATTCTTACTACTGCTGTATTTGTTGG 2347324 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||||||||| ||| | || ||||||||||| ||||| ||| ||| | |||| Sbjct 2347325 GCTGACTACATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 2347378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629700060290400