Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1674 120 4e-22 seq339 120 4e-22 seq1282 114 2e-20 >seq1674 Length=4410459 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | |||||| ||||| |||||||| |||||||| || | || | Sbjct 1955020 CCTCATCTCTACTGATGAGTTCGTTAGAAAAGGTGAGTCCAGGCATTAGTCCTCTTTTCT 1955079 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 1955080 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1955139 Query 36300 C 36300 | Sbjct 1955140 C 1955140 >seq339 Length=3172223 Score = 120 bits (132), Expect = 4e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||||| |||||| || | ||||| |||| | | ||| || ||||||||||||||||| || Sbjct 2348690 TATTTTTTATTAAATGCCTCCAATAAGC-GCAGCAGGTGTAAGAACAGATTGATGATGTC 2348632 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| | || || | || ||||| || || | || || || || | Sbjct 2348631 CAAGTAGAGATTGATTGCAGCCAATATGTACTCTTCGGGGGATAATTTGTGCATCAGCAA 2348572 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| Sbjct 2348571 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAA 2348512 Query 9407 CTCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 2348511 GTCTATTGTCTCACT 2348497 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||||| |||||| ||| | Sbjct 2347378 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGTAGTCAGCCCAACA 2347319 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||||| ||||||||||||| Sbjct 2347318 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGACAGACACATCATAGAAA 2347265 >seq1282 Length=7422214 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 513741 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 513682 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 513681 TCAGCCAAAATATCGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 513622 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | ||||| || Sbjct 513621 CAACCACCCTCTCACC 513606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658049968501200