Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq188 86.0 9e-12 >seq188 Length=444545 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 97995 TCCATTCAAAACATTACCATCATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTG 98053 ||| |||| ||||| || || || || || ||| |||| ||||||||||||| || Sbjct 233265 TCCTTTCAGAACATCCCCGAGATTCCTGATGACTTGAAGCAGC-TCTACAAGACTGTGTG 233323 Query 98054 GGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACC 98112 |||||| ||| | ||||| | | | ||||| || |||||||||| || |||||||| Sbjct 233324 GGAGATCTCCCA-GAAGACTGTCCTGAAGATGGCAGCGGACAGAGGTGCCTTCATTGACC 233382 Query 98113 AGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA 98152 |||| ||||| |||| | || | || ||||||| ||| Sbjct 233383 AGAGCCAATCTCTCAACATCCACATCGCGGAGCCCAACTA 233422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740920899826800