Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2577 168 2e-36 seq725 159 8e-34 seq1674 111 4e-19 seq1282 111 4e-19 seq1383 93.3 1e-13 >seq2577 Length=9266930 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||||||||||||||||| ||||| | ||||| | ||||||||| Sbjct 5340650 GCTTTATGGTGGTATTATATCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 5340591 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 5340590 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 5340531 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 5340530 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 5340488 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 78649 AGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTATTACGG 78708 ||| ||| | |||||| | || ||| |||| | || || |||||||| | |||||||| Sbjct 5338385 AGCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTACGG 5338326 Query 78709 TATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTTACTAT 78768 | ||||| || ||||||| ||||| ||||| ||||||||||| |||| | || || Sbjct 5338325 ATTAGCTGCCTGTGGCCCTAAATTTCAGAAGTACCTGTGGTGGAAGCGATACTTGACCAT 5338266 Query 78769 AATGCAATTG 78778 | | || ||| Sbjct 5338265 ATTACAGTTG 5338256 >seq725 Length=5509020 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| || || ||||| ||||| || || |||||| Sbjct 5362090 ATGCCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCA 5362031 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 5362030 GAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGG 5361971 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 5361970 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCA 5361911 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| ||||| || || || || || ||||||||||| Sbjct 5361910 ACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| || || ||||| ||||| || || |||||| Sbjct 5362318 ATGCCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCA 5362259 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||||||||| || Sbjct 5362258 GAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGG 5362199 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 5362198 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCA 5362139 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | || || ||||| |||||||| Sbjct 5362138 ACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 >seq1674 Length=4410459 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 1955155 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 1955096 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| || ||||| ||| | || || ||||||||| | Sbjct 1955095 TCAATTTTTTGGCTGAAGAAAAGAGGACTAATGCCTGGACTCACCTTTTCTAACGAACTC 1955036 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 1955035 ATCAGTAGAGATGA 1955022 >seq1282 Length=7422214 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 513606 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGCTCCTTTGCT 513665 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || |||||| ||||||| || ||||| ||||| ||| | |||||||| || ||| | Sbjct 513666 GCGATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 513725 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 513726 ATTAGCAGAGATGA 513739 >seq1383 Length=196733 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| ||||||||||| || || | || ||||| || |||||||||||||||| Sbjct 189857 CTTTTTGAATGTTATAGTCAGACAGCGTGCGCCCATCTTCAAGCTGTTTTCCAGCAAAAA 189916 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | |||| ||| ||||||||||| || ||| Sbjct 189917 TCAGCCGCTGCTGATCAGGAGGAATGCCT 189945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151178148280440