Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2593 113 3e-20 >seq2593 Length=513555 Score = 113 bits (124), Expect = 3e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| |||| |||||||||||| || || || ||||| | || Sbjct 10268 CATGTCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 10327 Query 25833 TCCATCTTCCCT-GTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || || || ||||| ||| ||| |||||||| || || | || ||||| || | Sbjct 10328 CCCCTCCTCTCTGGTGCTGAAA-CCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 10386 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| ||||| || ||||| | ||||| ||||||| ||||| || || Sbjct 10387 CCCAAATCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC 10435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340075708774890