Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2752 152 7e-32 seq14921 113 6e-20 >seq2752 Length=1424994 Score = 152 bits (168), Expect = 7e-32 Identities = 212/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||||||||| |||||| | |||| || ||| | | || Sbjct 1096263 GGAAAGCAGTGAAAGGACACCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCTG 1096204 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || | || ||||| | ||| || ||||||||||| |||||||| | |||| Sbjct 1096203 TATTGATTATTTCGAAGCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 1096144 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || || || || || ||||| || || | ||| | || Sbjct 1096143 AGCAGATCGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCGATCTCCACCATTG 1096084 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||||||| |||| || || | |||| ||||| Sbjct 1096083 TTTCACCAAAGATGGCACCTGGGCGTGGCTTTTCTACCAGGAGGCCTGGATACAGCTCCA 1096024 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| || |||||||| ||||| | ||||| || || ||||| |||||||||| Sbjct 1096023 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCCGCTGCCATTTCTTTTTCTCCTG 1095967 Score = 132 bits (146), Expect = 7e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | ||| ||||| || || || || || ||| || ||||| || ||||||| Sbjct 1094199 ATGAGCCTAGTAGTCTGGAAGAGCTGCTCATCGTCCCACTCGGGATGCTCCTGTTTCAGG 1094140 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | ||||| || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 1094139 ATGTCGCAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAATCCTGGG 1094080 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 1094079 ACCAAACCAAACACCTCCTGCCCGACAGAGAACTGCAGGTGTTCAGGTACGTGAGGAGGG 1094020 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | |||| || || || | || ||||||||||| || || || ||| Sbjct 1094019 TAGATCATCTCCGCCTGAGTGTCCTTCACTGTTGGCGGATACATTTCTCCATCGATCATC 1093960 Query 9862 T 9862 | Sbjct 1093959 T 1093959 >seq14921 Length=9872375 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||||||| || || |||||||||||||| | |||| Sbjct 7898085 TCTTAACTATCTCAAAGCCAGTTTCTCCGCCAAAAGTACTGGGTTTCCAGTACTCTGGGG 7898026 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || ||||||||||||| || | ||| | |||| Sbjct 7898025 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAACGGAGATCCGATCTCCACCATGC 7897966 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| || || | | ||| |||| || || | || || || | || ||||||| Sbjct 7897965 TTTCACCAAACATACCATCGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCA 7897906 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 7897905 GAGCATCAATGTCTCCATACAG 7897884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708392571559200