Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1386 125 1e-24 >seq1386 Length=165596 Score = 125 bits (138), Expect = 1e-24 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| ||||| Sbjct 7626 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCTAT 7685 Query 16492 CCGTCGTCTGGCTCGTCGTGGTG--GAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||| || | ||||| || || | | |||||||| |||| || | |||| || ||| Sbjct 7686 CCGCCGCCCGGCTCCGCGCGGCGCGGTGTCAAGCGCATCTCGGGGCTCATCTACGAGGAG 7745 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || | ||| ||||||| ||| ||| || | ||| || || ||| ||| Sbjct 7746 ACGCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATTCGTGACGCCGTCACCTACACC 7805 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | ||||| ||||| ||||||| | || || || | ||||| ||| Sbjct 7806 GAGCACGCCAAGAGGAAGACGGTCACTGCCATGGACGTGGTGTACGCCCTCAAACGCCAA 7865 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || || | | || || || || ||||| || Sbjct 7866 GGTCGCACCCTCTACGGCTTCGGTGGTTAAACT 7898 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 95231 CGCTAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 95172 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 95171 CCGCCGCCTGGCTCGCCGCGGCGGTGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 95112 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| || || | ||| || || ||| ||||| Sbjct 95111 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAATGTGATTCGTGACGCCGTCACCTACACCGA 95052 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || | ||||| || || ||||||| Sbjct 95051 GCACGCCAAGAGGAAGACGGTTACTGCCATGGA 95019 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || |||||||| || ||||||||||| || || Sbjct 109660 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 109719 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||| |||||||| |||| || | |||| || |||| Sbjct 109720 CCGCCGCCTGGCTCGCCGCGGTGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 109779 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || |||| || ||| || |||| ||| ||| || ||| ||||| Sbjct 109780 GCGCGGAGTCCTCAAAGTCTTTCTAGAGAATGTGATCCGTGACGCTGTCACCTACACCGA 109839 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | || ||||| | || || || || Sbjct 109840 GCACGCCAAGAGGAAGACGGTTACTGCCATGGACGTGGTGTATGCCCTCAAGCGCCAGGG 109899 Query 16672 CCG 16674 || Sbjct 109900 TCG 109902 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || ||||||||||| ||||||||||| || || Sbjct 116291 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAACATCCAAGGCATCACCAAGCCGGCCAT 116232 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| || ||||| |||||||| |||| || | |||| || |||| Sbjct 116231 CCGCCGCTTGGCTCGCCGCGGTGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 116172 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || |||| || ||| || |||| ||| ||| || ||| ||||| Sbjct 116171 GCGCGGAGTCCTCAAAGTCTTTCTAGAGAATGTGATCCGTGACGCTGTCACCTACACCGA 116112 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | || ||||| | || || || || Sbjct 116111 GCACGCCAAGAGGAAGACGGTTACTGCCATGGACGTGGTGTATGCCCTCAAGCGCCAGGG 116052 Query 16672 CCG 16674 || Sbjct 116051 TCG 116049 Score = 118 bits (130), Expect = 2e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 40180 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 40239 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 40240 CCGCCGCCTGGCTCGCCGCGGCGGTGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 40299 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| || || | || ||| || ||| ||||| Sbjct 40300 TCGCGGCGTGCTTAAGGTCTTCCTGGAGAATGTGATTCGCGACGCTGTCACCTACACCGA 40359 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || | ||||| || || ||||||| Sbjct 40360 GCACGCCAAGAGGAAGACGGTTACTGCCATGGA 40392 Score = 113 bits (124), Expect = 7e-21 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 85445 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 85504 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 85505 CGCCGCCTGGCTCGCCGCGGCGGTGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 85564 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| || || | ||| || || ||| |||||| Sbjct 85565 CGCGGCGTGCTCAAGGTCTTCCTGGAGAATGTGATTCGTGACGCCGTCACCTACACCGAG 85624 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||| || | ||||| || || ||||||| Sbjct 85625 CACGCCAAGAGGAAGACGGTTACTGCCATGGA 85656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061549396490