Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq188 100 7e-16 seq2593 98.7 3e-15 >seq188 Length=444545 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| || ||||| || || |||| ||||| || || ||||| ||| Sbjct 224373 GCCCAGCAGCTCTGGTACGCAATCATTGAGTCTCAGACAGAGACCGGCACGCCCTACATG 224432 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || || |||||||||||| |||||||||| |||| || || || | Sbjct 224433 CTTTACAAGGACTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 224492 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || |||||| Sbjct 224493 AGCAACCTCTGTACGGAAATAGTGGAGTACACC 224525 >seq2593 Length=513555 Score = 98.7 bits (108), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || ||||| | ||||| ||| || |||||||||| ||||||||||| Sbjct 10430 TACAAATGCCAAAGAACTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACG 10371 Query 111449 TGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 10370 TGAGTTCCTGGATAAGCAG--GGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTT 10313 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 || || || || ||| | || ||||| ||||| |||||| |||||| Sbjct 10312 TATGGTTTCCAGTGGAGGCATTTTGGAGCAGAATACAAAGACATGCA 10266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303104280675260