Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2475 131 1e-25 seq2463 107 1e-18 seq12135 96.9 2e-15 seq1378 84.2 1e-11 seq724 82.4 5e-11 >seq2475 Length=1097 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 349 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 290 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 289 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 255 >seq2463 Length=17948 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 15525 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 15466 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 15465 GCCGGTATTTAGCCTTA 15449 >seq12135 Length=551 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 500 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 441 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 440 GCCTGTATTTAGCCTT 425 >seq1378 Length=1736952 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || |||| || | || || ||| ||||| || || |||||||||||| Sbjct 707740 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 707681 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || | || || |||||||| || | | || || || | |||| Sbjct 707680 AAGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 707621 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| || || ||||||||||| || || || | || || Sbjct 707620 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 707561 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGT 38319 || | || ||||| || || |||| ||| ||||| || |||||||||| Sbjct 707560 TCGAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGT 707512 >seq724 Length=9359815 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||| || |||||||||||| ||| || ||||| || || || ||| | || Sbjct 1682425 AAGCCTGTTGCCCTGGCTGTGGTTTTGCTTGACAGTAGGTAAGGACAGTGGGAATTTTGT 1682366 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||| ||| || Sbjct 1682365 TCATCCATTCATGCGCGTCACTAATTAGTTGATGA 1682331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334886253216830