Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq725 91.5 1e-13 >seq725 Length=5509020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || || |||||| || || || ||| Sbjct 5362513 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5362454 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| || || ||||| || Sbjct 5362453 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5362394 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| |||||| |||| ||| | || ||||| |||| || Sbjct 5362393 ACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 5362334 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 5362333 TTCACAAAGATCTGCATG 5362316 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || || |||||| || || || || Sbjct 5362285 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5362226 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | |||||| || || ||||||||||| || || ||||| || Sbjct 5362225 GCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTA 5362166 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 5362165 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 5362106 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 5362105 TTCACAAAGATCTGCATG 5362088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420057952607160