Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1282 102 2e-16 seq188 93.3 8e-14 seq1674 84.2 4e-11 >seq1282 Length=7422214 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || |||||| |||| |||||| | || || || ||||||||||| |||||| |||| || Sbjct 513606 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGCTCCTTTGCT 513665 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 513666 GCGATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 513725 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 513726 ATTAGCAGAGATGAGG 513741 >seq188 Length=444545 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 244403 TAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-GGGCCTTGCCGCAGGTGAAGGG 244461 ||||| || ||||| |||||| || ||||| ||| |||||| ||| ||||| Sbjct 227776 TAGTAAATTGTCTCAAAGATCTGCTGGTTCAAA-CGCTGGGCCTCAGCGCTTTCAAAGGG 227718 Query 244462 GATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTG 244521 | || ||||| |||||| | || ||||| ||||||||||||||||| ||||| | ||| Sbjct 227717 GTAGCGCATCAGGATGAAGGCATCTGCCAGGCCCTGCACGCCGATGCCAATGGGACGGTG 227658 Query 244522 TCGCTTGTTGGAGCG 244536 ||| |||||||||| Sbjct 227657 GCGCCTGTTGGAGCG 227643 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || ||||||||| || || ||||||||||| ||| ||||| |||| | |||| Sbjct 222635 ACCCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 222576 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| | || || | || || |||| ||| | |||||| ||| Sbjct 222575 TCTTCCTTCCCGGTGTTCTTCTTTAGGTCAAGGAACTCGAAGATGTCCAAGTGCCATGGC 222516 Query 245123 TCCATGTAGA 245132 |||| |||| Sbjct 222515 TCCAGATAGA 222506 >seq1674 Length=4410459 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || |||||||| || ||| | || || || || || ||| Sbjct 1955143 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 1955084 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| | | ||| | ||||| ||||||||||| || |||||||||||||| || || Sbjct 1955083 CTGAAGAAAAGAGGACTA-ATGCCTGGACTCACCTTTTCTAACGAACTCATCAGTAGAGA 1955025 Query 42827 CGAGG 42831 |||| Sbjct 1955024 TGAGG 1955020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944162962696800