Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1378 136 4e-27 seq725 134 1e-26 seq1383 84.2 2e-11 >seq1378 Length=1736952 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| ||||||| |||||||||||| Sbjct 707480 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCG 707421 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| ||||||||||| ||||| || || || || || ||| Sbjct 707420 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 707361 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | ||| | ||||||||| |||| || Sbjct 707360 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTC 707301 Query 64427 TTTACGAAAATTTGCATTTTAAT 64449 || || || || ||||| || || Sbjct 707300 TTCACAAAGATCTGCATCTTGAT 707278 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | | |||||| | ||||| |||||||||||| Sbjct 707710 GTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCG 707651 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| || || || || || || || || || || ||| Sbjct 707650 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 707591 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | ||| | |||||||| |||| || Sbjct 707590 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGTCAGGGTC 707531 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 707530 TTCACAAAGATCTGCAT 707514 >seq725 Length=5509020 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | || ||||||| | ||| Sbjct 5362300 AGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 5362241 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||| || ||||| ||||| ||||| || || Sbjct 5362240 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCC 5362181 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | |||| Sbjct 5362180 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 5362121 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || || ||||| Sbjct 5362120 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | || ||||||| | ||| Sbjct 5362528 AGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 5362469 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || ||||| ||||| || || Sbjct 5362468 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCC 5362409 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | |||| Sbjct 5362408 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTC 5362349 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || || ||||| Sbjct 5362348 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | ||||||| | ||| Sbjct 5362072 AGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCT 5362013 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || ||||| ||||| || || Sbjct 5362012 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCC 5361953 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | |||| Sbjct 5361952 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTC 5361893 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | || || ||||| || |||||||| Sbjct 5361892 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 >seq1383 Length=196733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||||||||| || || | | |||||| | ||||||||||| || || ||| ||| Sbjct 189857 CTTTTTGAATGTTATAGTCAGACAGCGTGCGCCCATCTTCAAGCTGTTTTCCAGCAAAAA 189916 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 | ||||||||||| || |||||||| ||| Sbjct 189917 TCAGCCGCTGCTGATCAGGAGGAATGCCT 189945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499551553789200