Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1378 93.3 4e-14 seq188 89.7 5e-13 >seq1378 Length=1736952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || ||| ||| || || || || |||| | Sbjct 707477 GATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCA 707418 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| ||||| ||| || || | Sbjct 707417 AAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 707358 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | || || |||||||| || || Sbjct 707357 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 707298 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 707297 ACAAAGATCTGCAT 707284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 ||||| || |||| |||| || | || | | | || ||||| || |||||||||||| Sbjct 708199 CAGCCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 708140 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || || ||| || || || || || |||| | |||| || | ||| ||||| || Sbjct 708139 GACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 708080 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || ||||| ||| || || | | || | |||||| | | ||| Sbjct 708079 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCC 708020 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | || || |||||||| || || ||||| ||||||||| Sbjct 708019 ACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 707969 >seq188 Length=444545 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| || || | ||||||||||||||||| ||| |||| || ||||| | Sbjct 224523 TGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 224464 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| ||||| ||||| | ||| ||| | |||||||| || ||||||||| Sbjct 224463 TGCTCTTGCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGGCGTGCCGGTCTC 224412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496169785029600