Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2752 138 2e-27 seq14921 107 3e-18 >seq2752 Length=1424994 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| || || || | |||||| || |||| || || || || ||||| || Sbjct 1094199 ATGAGCCTAGTAGTCTGGAAGAGCTGCTCATCGTCCCACTCGGGATGCTCCTGTTTCAGG 1094140 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | |||||||||| ||||||||| ||||||||||| || ||||||||||| || || || Sbjct 1094139 ATGTCGCAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAATCCTGGG 1094080 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | || |||| | || || || | || | Sbjct 1094079 ACCAAACCAAACACCTCCTGCCCGACAGAGAACTGCAGGTGTTCAGGTACGTGAGGAGGG 1094020 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | | |||| || || || || || || ||||||||||| || || || Sbjct 1094019 TAGATCATCTCCGCCTGAGTGTCCTTCACTGTTGGCGGATACATTTCTCCATCGAT 1093964 Score = 136 bits (150), Expect = 6e-27 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 1096263 GGAAAGCAGTGAAAGGACACCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCTG 1096204 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || ||||||||||| ||||||||| | |||| Sbjct 1096203 TATTGATTATTTCGAAGCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 1096144 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || || |||| || ||||| || || | ||| | || Sbjct 1096143 AGCAGATCGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCGATCTCCACCATTG 1096084 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | || ||| | || || || | Sbjct 1096083 TTTCACCAAAGATGGCACCTGGGCGTGGCTTTTCTACCAGGAGGCCTGGATACAGCTCCA 1096024 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 ||| || | ||| ||||| || |||||| || || || || || || || ||| ||| Sbjct 1096023 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCCGCTGCCATTTCTTTTTCTCCTGCAA 1095964 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | |||| ||| | || Sbjct 1095443 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAACGTG 1095384 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | |||||| ||||||| |||||||| ||||| || || ||||||||| Sbjct 1095383 TCCGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATCCGGTTCTGG 1095324 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 1095323 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 1095266 Query 9671 CGCT 9674 | || Sbjct 1095265 CACT 1095262 >seq14921 Length=9872375 Score = 107 bits (118), Expect = 3e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || || || || || || || || ||||| || || ||||||||||||||| | Sbjct 7898090 TGCTGTCTTAACTATCTCAAAGCCAGTTTCTCCGCCAAAAGTACTGGGTTTCCAGTACTC 7898031 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 |||||||||||| ||| | | ||||| |||| ||||||||||| || | ||| | Sbjct 7898030 TGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAACGGAGATCCGATCTCCAC 7897971 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| ||||| || || || |||| | ||||| || | | ||||| | || | Sbjct 7897970 CATGCTTTCACCAAACATACCATCGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAAAA 7897911 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170 || | ||| || | ||| ||||| || ||| || ||| || || ||| ||||| Sbjct 7897910 CTCCAGAGCATCAATGTCTCCATACAGTTCTTGCAGCTCTGCCGCCTTCT-CTTCT 7897856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||||| |||| | || ||| ||| Sbjct 7896660 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAACTGTACTCTTC-TC-CCTGGATGA 7896603 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| ||||||| |||| || |||||||| | || || | Sbjct 7896602 TGAAGGAGTCGGGCATCAGCCCATGCCAGTGGTAAAGCTGGTTGAACTCCACTGCAATGC 7896543 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || || || ||||| | ||| ||||| || |||| |||| Sbjct 7896542 GATTCCGGTACTGGAACTGCGTCCCAAACAGCAGCTCAGGGTCGAACTTTAGGCTGAAGA 7896483 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 |||||| ||||| ||||||||||| | | || | || || ||||| ||||| || Sbjct 7896482 AGTACCCACTGAGATGCTGGACATAGTCTTCAATGACGATCTTGATGGTCTCCCCTGT 7896425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723592934262000