Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq188 98.7 2e-15 >seq188 Length=444545 Score = 98.7 bits (108), Expect = 2e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||||||||| | ||||||| | ||||| | |||||| || || |||| Sbjct 233463 CCTGCTTCCACCCGTAGAAGTGCATGCTGGTGAGTTTTCCATAGTTGGGCTCCGCGATGT 233404 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| ||||| ||||| ||||| ||||| ||| || | || || ||||| || | Sbjct 233403 GGATGTTGAGAGATTGGCTCTGGTCAATGAA-GGCACCTCTGTCCGCTGCCATCTTCAGG 233345 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | |||||||| || ||||||||||| |||||| Sbjct 233344 ACAGTCTTCTGGGAGATCTCCCACACAGTCTTG 233312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795006804160800