Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1378 136 9e-27 seq725 118 2e-21 >seq1378 Length=1736952 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || || ||||| |||| |||||| |||| ||| || Sbjct 707734 CGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTG 707675 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||| ||||| ||||| | | ||||||||| || || || Sbjct 707674 CGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCC 707615 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || || | Sbjct 707614 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGA 707555 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 707554 GTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 707517 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || || ||||| |||| ||||||||| | || || Sbjct 707962 CGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 707903 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| ||||| ||||| || | ||||||||| || || || Sbjct 707902 CGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCC 707843 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | |||||| | | ||| || || | Sbjct 707842 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGG 707783 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| ||||| Sbjct 707782 GTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATTTG 707745 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || || ||||| |||| ||||||||| | || || Sbjct 708190 CGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 708131 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| ||||| ||||| || | ||||||||| || || || Sbjct 708130 CGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCC 708071 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | ||| || || | Sbjct 708070 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCAAGA 708011 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 708010 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 707973 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 ||||| || |||||| || || ||||| |||| ||||||||||| || || | || Sbjct 707498 CTCAGAGAAATGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 707439 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 |||||||||||||| ||||| ||||| || | |||||| || ||| ||| ||||| Sbjct 707438 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 707379 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||||||| |||| |||||| | | || || || | ||||| Sbjct 707378 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 707319 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| || || Sbjct 707318 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 707287 >seq725 Length=5509020 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || ||||| || ||||| |||| ||||||||||| | || | ||||| Sbjct 5362529 CAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATC 5362470 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 5362469 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATC 5362410 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | ||| || |||| ||||| || Sbjct 5362409 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGT 5362350 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 5362349 CTTGCCTGTCAAGGTCTTCACAAAGATCTG 5362320 Score = 114 bits (126), Expect = 3e-20 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || | ||| || ||||| |||| ||||||||||| | || | ||||| Sbjct 5362073 CAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATC 5362014 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 5362013 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATC 5361954 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| |||||| | | || || || | ||||| || Sbjct 5361953 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGT 5361894 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || ||||| || ||||| || || || |||||| Sbjct 5361893 CTTGCCAGTGAGGGTCTTCACGAAGATCTG---CATTTT 5361858 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || | ||| || ||||| |||| ||||||||||| | || | ||||| Sbjct 5362301 CAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATC 5362242 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||| || || || ||| ||||| || Sbjct 5362241 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATC 5362182 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 5362181 CTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 5362122 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 5362121 CTTGCCTGTCAAGGTCTTCACAAAGATCTG 5362092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178696083350310