Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1378 138 1e-27 seq725 131 2e-25 >seq1378 Length=1736952 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || |||||| | || || |||||||| ||||| || Sbjct 707932 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 707873 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 707872 ATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 707813 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | |||||| || | |||||||| ||||| ||||| || || ||| Sbjct 707812 TCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 707753 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 707752 AAGATTTGCAT 707742 Score = 136 bits (150), Expect = 4e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || |||||| |||| || |||||||||||||| || Sbjct 707474 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 707415 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||| |||| || | || ||||||||| |||||| ||| | || Sbjct 707414 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 707355 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||||| || | |||||||| ||||| ||||| || || ||| Sbjct 707354 TCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 707295 Query 46583 AAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 707294 AAGATCTGCATCTTG 707280 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || |||||| | || || |||||||| ||||| || Sbjct 708160 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 708101 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 708100 ATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 708041 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | |||||| || | |||||||| ||||| ||||| || || ||| Sbjct 708040 TCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 707981 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 707980 AAGATCTGCAT 707970 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || | ||||| | || || |||||||||||||| || Sbjct 707704 TCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 707645 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 707644 ATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 707585 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||||| || | ||||| || ||||| ||||| || || ||| Sbjct 707584 TCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACA 707525 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 707524 AAGATCTGCAT 707514 >seq725 Length=5509020 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||| |||||||| || ||||| ||||| |||||||| | Sbjct 5362089 TGCCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAG 5362030 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 5362029 AAAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGG 5361970 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| |||||| ||||| || | | ||||| || | || | Sbjct 5361969 GAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAA 5361910 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| ||||| || || || || || ||||| |||||||| Sbjct 5361909 CTTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||| |||||||| || ||||| ||||| |||||||| | Sbjct 5362317 TGCCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAG 5362258 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| | ||| || |||| | Sbjct 5362257 AGAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGG 5362198 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| |||||| ||| | || | | ||||| || | || | Sbjct 5362197 GAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAA 5362138 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| |||| || || |||||||| ||||| Sbjct 5362137 CTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||||| || ||||| ||||| |||||||| || || |||||| | Sbjct 5362531 CGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCA 5362472 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | |||||| || | || | || ||||| Sbjct 5362471 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTA 5362412 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | ||| || |||| |||||| Sbjct 5362411 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATG 5362352 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || |||||||| ||||| Sbjct 5362351 GTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565132912383600