Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq725 141 9e-29 seq1378 118 1e-21 seq1674 95.1 1e-14 seq1282 87.8 2e-12 >seq725 Length=5509020 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| || Sbjct 5361858 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAAGTTGAGCCC 5361917 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || || || |||||| | || Sbjct 5361918 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGAT 5361977 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 5361978 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCTGACTAC 5362037 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || ||||| | |||||||| ||||||| ||| Sbjct 5362038 AACATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 5362088 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| Sbjct 5362089 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 5362148 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| || || || || |||||| |||| ||| Sbjct 5362149 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGATCAA 5362208 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||||| ||||||||| Sbjct 5362209 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 5362268 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || ||||| | |||||||| ||||||| ||| Sbjct 5362269 ATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 5362316 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || ||||| ||| Sbjct 5362317 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTCGAACCCAGT 5362376 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || || || |||||| | || || Sbjct 5362377 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAG 5362436 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||||| ||||||||| Sbjct 5362437 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 5362496 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || |||||| | |||||||| |||| || || Sbjct 5362497 ATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGG 5362543 >seq1378 Length=1736952 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| |||||||| |||| || ||| || Sbjct 707281 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCC 707340 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || || ||||| |||| Sbjct 707341 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGA 707399 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| |||||||| |||| ||||||||| ||||| Sbjct 707400 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 707459 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| |||||| | || || || Sbjct 707460 CAACATCCAGAAGGAATCCACCCTCCA 707486 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| ||||||||| | || || || ||| Sbjct 707742 ATGCAAATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAACCCAGT 707801 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 707802 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 707861 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | ||||||||| |||||||||| Sbjct 707862 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 707921 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || | || ||||| || | || ||| Sbjct 707922 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 707969 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || || ||| Sbjct 707970 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 708029 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 708030 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 708089 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | ||||||||| |||||||||| Sbjct 708090 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 708149 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || | || ||||| || | || ||| Sbjct 708150 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 708197 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || ||||| |||| || ||| ||| Sbjct 707514 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTCGAGGTGGAGCCCAGT 707573 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 707574 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 707633 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| |||||||| || | |||||| | || |||||| Sbjct 707634 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCTTGTCTGATTACAAC 707693 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || | || ||||| || | || ||| Sbjct 707694 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 707741 >seq1674 Length=4410459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || ||||||||||| || ||||| ||| ||||| Sbjct 1957966 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCTTTCTTATACATCTGCCAGATGTCGTG 1958025 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || ||||| |||||||||||||| |||| ||| |||||| Sbjct 1958026 GTACTGGATGGGGAAGATGACAAAGCGGCGGGGGTTTTCCCGCAGCAGTGGCTCC 1958080 >seq1282 Length=7422214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 513741 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 513682 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || |||||||||||||| ||| || || || || || | Sbjct 513681 TCAGCCAAAATATCGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 513622 Query 133037 CCACCA 133042 | |||| Sbjct 513621 CAACCA 513616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500079455251200