Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1268 113 3e-19 seq2829 96.9 3e-14 >seq1268 Length=965101 Score = 113 bits (124), Expect = 3e-19 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||||||||| |||||| |||| | ||||| ||||| || |||| || Sbjct 655689 CAAAAACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTGGCAGCATCACCGATCA-AT 655747 Query 518583 GT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 | ||||| || || || | ||||| ||| || || || ||||| |||||||| ||| Sbjct 655748 CTCTCTGTATCCGTGAAGGCGACATAGCTTGGTGTGGTCCGGTTACCCTGATCATTTGCA 655807 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 || ||||| || || || | ||| ||||||| ||||| | | || || || | |||| Sbjct 655808 ATGATTTCCACCTTCCCGTGTTGGAATACACCAACACAGGAATAGGTGGTGCCCAGATCA 655867 Query 518702 ATACCAATAGC 518712 || || | ||| Sbjct 655868 ATTCCGACAGC 655878 >seq2829 Length=2027494 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || || || ||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1434241 TGTTGTGGCTACGATTGCGTTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1434300 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1434301 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1434360 Query 367113 TGATGG 367118 |||||| Sbjct 1434361 TGATGG 1434366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780081524220580