Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1268 196 6e-45 >seq1268 Length=965101 Score = 196 bits (216), Expect = 6e-45 Identities = 371/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || |||||||| || || || | || ||||| || || || || ||| Sbjct 654056 GCACCGTAAGCCACAGCCTCATCAGGATTGATGCTCTTGTTCAGCTCCTTGCCATTGAAA 654115 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || || || || ||||| || || || ||||| |||| || || Sbjct 654116 AAATCCTGCAGCAGTTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGGACAATG 654175 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| |||| || | || || || | || || ||||| |||| Sbjct 654176 TCATGGATCTGTGATTTGTCGAGTTTGGCATCCCGCAGGGCCTTCTCTACAGGATCCAGG 654235 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| ||| || ||||| || || | ||||||||||| ||| Sbjct 654236 GTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTAGTAATGGATGTGTAG 654295 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | || || || | |||||||||||||| | | |||| | || || || Sbjct 654296 AAGTCGATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGTGTGCTGGATGACAAG 654355 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| |||||||| || || || | || |||| || | | ||| || Sbjct 654356 GTACGCTTTGCACGCTCACAGGCAGTGCGGAGGCGGCGAACTGCCCTCTTGTTCTCGCTG 654415 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 ||||||||||| || || || || || || || ||||| || || | | | | Sbjct 654416 ATATCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTT---G 654472 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| || || || || || | ||| || ||||| || || Sbjct 654473 TCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAAATGCCA 654532 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || || |||||||| || || Sbjct 654533 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGATCAAAAATAAGAACA 654592 Query 7577 TTC 7579 ||| Sbjct 654593 TTC 654595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635014268341200